View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7076_low_2 (Length: 480)
Name: NF7076_low_2
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 249290 - 248844
Alignment:
| Q |
19 |
atctcttgccaggtatgtatgcatgtatgtaccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtcacttttattttcttaa |
118 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249290 |
atctcttgccaggtatgtatg----tatgtaccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtcacttttattttcttaa |
249195 |
T |
|
| Q |
119 |
atcattactagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaattgattatatatgtca |
218 |
Q |
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| T |
249194 |
atcattaccagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaattgattatatatgtca |
249095 |
T |
|
| Q |
219 |
ggtgttgacgttcatatagagtgcagatttagagcaagctcaccaagaaccaacgaacagataaatttctcagtgaacagaacaacagacagagagggag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249094 |
ggtgttgacgttcatatagagtgcagatttagagcaagctcaccaagaaccaacgaacagataaatttctcagtgaacagaacaacagacagagagggag |
248995 |
T |
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| Q |
319 |
catacaaattagatataccatcagtggatggaactaactgtaaaattgccatggatggtaattcacagattgtgtctctctgccaagcaaccttgatagg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
248994 |
catacaaattagatataccatcagtggatggaactaactgtaaaattgccatggatggtaattcacagattgtgtctctctgccaagcaagcttgatagg |
248895 |
T |
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| Q |
419 |
aacttcatcatcttcttattcttgcaatgttcctttcttgaagagcacagg |
469 |
Q |
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| T |
248894 |
aacttcatcatcttcttattcttgcaatgttcctttcttgaagagcacagg |
248844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 17105300 - 17105255
Alignment:
| Q |
95 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
140 |
Q |
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| T |
17105300 |
attcaatcacttttattttcttaaattattattagtgtctatgtgt |
17105255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 26473302 - 26473347
Alignment:
| Q |
95 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
140 |
Q |
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| T |
26473302 |
attcagacacttttattttcttaaactattacaagtgtctatgtgt |
26473347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 28090409 - 28090460
Alignment:
| Q |
95 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgt |
146 |
Q |
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|||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
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| T |
28090409 |
attcagtcacttttattttcttaaattgttactagtgtgtgtgtgtgtgtgt |
28090460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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