View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7076_low_3 (Length: 474)
Name: NF7076_low_3
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_3 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 5731870 - 5731464
Alignment:
| Q |
19 |
gctttataataattgtttcatgagactccatatatgttgtgtgattcagcatacacacacaaaaatttcatatatagttgcaatctagttctcttttctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5731870 |
gctttataataattgtttcatgagactccatatatgttgtgtgattcagcatacacacacaaaaatttcatatatagttgcaatctagttctcttttctt |
5731771 |
T |
|
| Q |
119 |
ttgcctaaaatatatatgctgaaaacttgtaaaatacatgcaagt---------atacaatatataagatgtggaggctgaagatagcagatggtgggaa |
209 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5731770 |
ttgcctaaaatatatatgctgaaa-cttgtaaaatacatgcaagttataaagtgatatattatataagatgtggaggctgaagatagcagatggggggaa |
5731672 |
T |
|
| Q |
210 |
tgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaa |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5731671 |
tgatccacacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggagagagctcaagttgaaaaa |
5731572 |
T |
|
| Q |
310 |
gcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattatattttcttgtaataggaatcctc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5731571 |
gcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattatattttcttgtaataggaatcctc |
5731472 |
T |
|
| Q |
410 |
tcaatttt |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
5731471 |
tcaatttt |
5731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 5701277 - 5700906
Alignment:
| Q |
19 |
gctttataataattgtttcatgagactcc---atatatgttgtgtgattcagcata--cacacacaaaaatttcatatatagttgcaatctagttctctt |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5701277 |
gctttataataattgttgcatgagactcctccatatatgttgtgtgattcagcatatacacacacaaaaatctcatatatagttgcaatctagttctctt |
5701178 |
T |
|
| Q |
114 |
ttcttttgcctaaaatatatatgctgaaaacttgtaaaatacatgcaagtatacaatatataagatgtggaggctgaagatagcagatggtgggaatgat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5701177 |
ttcttttgcctaaaatatatatgctgaaa-cttgtaaaatacatgcaagtatacaatatataagatgtggaggctgaagatagcagatggggggaatgat |
5701079 |
T |
|
| Q |
214 |
ccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5701078 |
ccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggagagagctcaagttgaaaaagcac |
5700979 |
T |
|
| Q |
314 |
gtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5700978 |
gtcaacatttctataacaatcgtttcaaagttaagccctgcagtgaccttctttggcgttttcaggtaattat |
5700906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 5681233 - 5680853
Alignment:
| Q |
19 |
gctttataataattgtttcatgagactcc---atatatgttgtgtgattcagcata--cacacacaaaaatttcatatatagttgcaatctagttctctt |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5681233 |
gctttataataattgttgcatgagactcctccatatatgttgtgtgattcagcatatacacacacaaaaatctcatatatagttgcaatctagttctctt |
5681134 |
T |
|
| Q |
114 |
ttcttttgcctaaaatatatatgctgaaaacttgtaaaatacatgcaagt---------atacaatatataagatgtggaggctgaagatagcagatggt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5681133 |
ttcttttgcctaaaatatatatgctgaaa-cttgtaaaatacatgcaagttataaagtgatatattatataagatgtggaggctgaagatagcagatggt |
5681035 |
T |
|
| Q |
205 |
gggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttg |
304 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
5681034 |
gggaaggatccatacatattcagtacaaataactttgtggggaggcagacatgggagtttgatgctgatgctggtactcctgaggagagatctcaagttg |
5680935 |
T |
|
| Q |
305 |
aaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
386 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5680934 |
aaaaagcacgtcaacatttctatgacaatcgtttcaaagttaagccctgcagtgaccttctttggcgctttcaggtaattat |
5680853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 168 - 386
Target Start/End: Complemental strand, 5673422 - 5673204
Alignment:
| Q |
168 |
aatatataagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgat |
267 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| || || |||||||| ||||| || |||||| | |||||||||||||||||||||||| |
|
|
| T |
5673422 |
aatatataagatgcggaggctgaagatagctgatggtggaaaagacccatacattttcagccttaacaactttgtggggaggcagacatgggagtttgat |
5673323 |
T |
|
| Q |
268 |
ccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttcttt |
367 |
Q |
| |
|
| ||||||||||| ||||||| || ||||||||||||| || | | || |||||||| |||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
5673322 |
cttgatgctggtactcctgaggagagggctcaagttgaaacggctcataaaaatttctatgacaactgtttctatgttaagccctgcagtgaccttcttt |
5673223 |
T |
|
| Q |
368 |
ggcgctttcaggtaattat |
386 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5673222 |
ggcgctttcaggtaattat |
5673204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 5694906 - 5694763
Alignment:
| Q |
244 |
gggaggcaga-catgggagtttgatccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaa |
342 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| || ||| || |||||||| |||| | ||||||| |
|
|
| T |
5694906 |
gggaggcagatcatgggagtttgatcctgatgctggtactcctgaggagagagctcaagttgaaacggctcgtaaaaatttctatgacaaccatttcaaa |
5694807 |
T |
|
| Q |
343 |
gttaaaccctgcagtgaccttctttggcgctttcaggtaattat |
386 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
5694806 |
gttaagccctgtagtgaccttctgcggcgcttttaggtagttat |
5694763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 386
Target Start/End: Complemental strand, 5725277 - 5725065
Alignment:
| Q |
168 |
aatatataagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || | || | ||| |||||||||| || |||||| | |||||| ||||||||||||||||| |
|
|
| T |
5725277 |
aatatataagatgtggaggctgaagatagctgattgtagaaagggcccaaacatattcagccttaacaactttgt-gggaggtagacatgggagtttgat |
5725179 |
T |
|
| Q |
268 |
ccaaatgctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttcta-taacaatcgtttcaaagttaaaccctgcagtgaccttctt |
366 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||| || | || ||| || ||||||| | ||||||||||||||||||| ||||| ||||||||| | |
|
|
| T |
5725178 |
cctgatgctggtact---gaggagagagctcaaatt---acggctcgtaaaaatttctaatgacaatcgtttcaaagttaagccctgtggtgaccttcct |
5725085 |
T |
|
| Q |
367 |
tggcgctttcaggtaattat |
386 |
Q |
| |
|
| |||| |||||||| |||| |
|
|
| T |
5725084 |
tagcgcgttcaggtagttat |
5725065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 460
Target Start/End: Complemental strand, 5731433 - 5731385
Alignment:
| Q |
412 |
aattttaactccattaattatttatttatcaacctaccatcaatgatgt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
5731433 |
aattttaactccattaattatttatttatcaacctaccttcaattatgt |
5731385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 381
Target Start/End: Original strand, 13041214 - 13041420
Alignment:
| Q |
175 |
aagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatg |
274 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||| |||| || || | |||||||| ||||||||| | |
|
|
| T |
13041214 |
aagatgtggaggttgaagatagcagatggtggtaatgacccatacatattcagcacaaacaactttgtaggaagacaaatatgggagtatgatccaaaag |
13041313 |
T |
|
| Q |
275 |
ctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctt |
374 |
Q |
| |
|
| ||||||| ||||| ||||| ||||||||| |||| ||||| |||| |||||||| || || ||||| || | || |||||||| |||||||| || |
|
|
| T |
13041314 |
caggtactttggaggagagagcacaagttgaagaagctcgtcagaatttttataacaaccgctttaaagtcaagctatgtagtgacctcctttggcgttt |
13041413 |
T |
|
| Q |
375 |
tcaggta |
381 |
Q |
| |
|
||||||| |
|
|
| T |
13041414 |
tcaggta |
13041420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 381
Target Start/End: Complemental strand, 102369 - 102163
Alignment:
| Q |
175 |
aagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatg |
274 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||| | || || || |||||||||| ||||||| | | |
|
|
| T |
102369 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagtatgatccagaag |
102270 |
T |
|
| Q |
275 |
ctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctt |
374 |
Q |
| |
|
| |||| | || || || || ||||||||| |||| ||| | ||||||||||||| || |||||||| || |||||| |||| || || ||||| || |
|
|
| T |
102269 |
caggtagtgaagaagagagggcccaagttgaagaagctcgtaagaatttctataacaaccgcttcaaagtcaagccctgcggtgatctcctctggcgttt |
102170 |
T |
|
| Q |
375 |
tcaggta |
381 |
Q |
| |
|
||||||| |
|
|
| T |
102169 |
tcaggta |
102163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 381
Target Start/End: Complemental strand, 12143217 - 12143012
Alignment:
| Q |
176 |
agatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatgc |
275 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || || |||||||||| |||||||||||| |||| || ||||||||||| ||||| || |||| |
|
|
| T |
12143217 |
agatgtggaggcttaagatagcagatggtgggaaggacccttacatattcaccacaaataactttgtaggaagacagacatgggaatttgaccctgatgc |
12143118 |
T |
|
| Q |
276 |
tggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgcttt |
375 |
Q |
| |
|
|||||| ||| ||| |||| |||||| |||| ||||| ||||||||| ||| || || || ||||| || || | ||||| |||||||||||| |
|
|
| T |
12143117 |
aggtactcatgaagaacgagcaatggttgaagaagctcgtcacaatttctatatcaaccgatttaaggttaagccatgtggcgacctcctttggcgcttt |
12143018 |
T |
|
| Q |
376 |
caggta |
381 |
Q |
| |
|
|||||| |
|
|
| T |
12143017 |
caggta |
12143012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 381
Target Start/End: Original strand, 154294 - 154500
Alignment:
| Q |
175 |
aagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaatg |
274 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||||| ||| | || || || |||||||||| ||||||| | | |
|
|
| T |
154294 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaatagttttgtgggaagacaaacatgggagtatgatccagaag |
154393 |
T |
|
| Q |
275 |
ctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgctt |
374 |
Q |
| |
|
| |||| | || |||||||| ||||||||| |||| ||| | |||||||||| || || ||||| ||||| |||| |||| || |||||||| || |
|
|
| T |
154394 |
caggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggtgatctcctttggcgttt |
154493 |
T |
|
| Q |
375 |
tcaggta |
381 |
Q |
| |
|
||||||| |
|
|
| T |
154494 |
tcaggta |
154500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 387
Target Start/End: Complemental strand, 10307868 - 10307655
Alignment:
| Q |
174 |
taagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaat |
273 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||| || | | | ||||| || |||||||| | |||||| | |
|
|
| T |
10307868 |
taagatgtggaagctgaagatagcagaaggtgggaatgacccatacttattcagcacaaacaattctgtggggagccaaacatgggaataggatccagaa |
10307769 |
T |
|
| Q |
274 |
gctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgct |
373 |
Q |
| |
|
|| |||| | || || ||||||||||||||| ||| ||| | |||||||||| || |||||||| ||||| |||| ||||||| |||| ||| | |
|
|
| T |
10307768 |
gcaggtagtgaagaagagagagctcaagttgaagaagttcgtaagaatttctataataaccgtttcaaggttaagacctgtggtgacctcctttcgcgtt |
10307669 |
T |
|
| Q |
374 |
ttcaggtaattata |
387 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
10307668 |
ttcaggtacttata |
10307655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 381
Target Start/End: Original strand, 100414 - 100621
Alignment:
| Q |
174 |
taagatgtggaggctgaagatagcagatggtgggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagtttgatccaaat |
273 |
Q |
| |
|
||||||||||| ||||||||| | ||| || |||||| |||||| ||||||| |||||||| ||| | || || || |||||||||| ||||||| | |
|
|
| T |
100414 |
taagatgtggaagctgaagattggagagggaaagaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagtatgatccagaa |
100513 |
T |
|
| Q |
274 |
gctggtacttctgaggaaagagctcaagttgaaaaagcacgtcaacatttctataacaatcgtttcaaagttaaaccctgcagtgaccttctttggcgct |
373 |
Q |
| |
|
|| |||| | || |||||||| ||||||||| |||| ||| | |||||||| |||| | ||||| || || ||||| ||||||| || ||||| | |
|
|
| T |
100514 |
gcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggtgacctcctatggcgtt |
100613 |
T |
|
| Q |
374 |
ttcaggta |
381 |
Q |
| |
|
|||||||| |
|
|
| T |
100614 |
ttcaggta |
100621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University