View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7076_low_4 (Length: 470)
Name: NF7076_low_4
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 51378221 - 51377770
Alignment:
| Q |
19 |
ccttgcacagggtggcaggctttccgcacggtggcttgtgtgttgatgtcttggactaaattggtaagtgttctttacaggccgggacttcgtggttatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51378221 |
ccttgcacagggtggcaggctttccgcatggtggcttgtgtgttgatgtcttggactaaattggtaagtgttccttacaggccgggacttcgtggttatt |
51378122 |
T |
|
| Q |
119 |
caatctatagcaaggtagtatatattccagaagatggtcaagtgctgatggagtttctgaaaaatgagatatttagtttgtttgtctatgatccctgaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
51378121 |
caatctatagcaaggtagtatatatttcagaagatggtcaactgctgatggagtttctgaaaaatgggatatttagtttggttgtctatgattcctgaaa |
51378022 |
T |
|
| Q |
219 |
tgacacttttaaggtccctgagattgaaaacctcaatggtcggatgac------------------gagtttgatctcacctttttctcaatattaggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51378021 |
tgacacttttaaggtccctgagattgaaaacctcaatggtcggatgacatcaaacatctacgttgagagtttgatctcacctttttctcaatattaggat |
51377922 |
T |
|
| Q |
301 |
gtagatgttttgttaacttatgagtgatcttgttatttttatatttattctatggttgttgtagttagtggtgacttcatggtttttattgttaatttct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51377921 |
gtagatgttttgttaacttatgagtgatcttgttatttttatatttattttatggttgttgtagttagtggtgacttcatggtttttattgttaatttct |
51377822 |
T |
|
| Q |
401 |
tacggcctgcttgagaaattgctatgatattttcatttatttgtttgcgttg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51377821 |
tacggcctgcttgagaaattgctatgatattttcatatatttgtttgcgttg |
51377770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 51756396 - 51756360
Alignment:
| Q |
409 |
gcttgagaaattgctatgatattttcatttatttgtt |
445 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51756396 |
gcttgagaaattgctatgttattttcatttatttgtt |
51756360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 51762714 - 51762674
Alignment:
| Q |
267 |
gagtttgatctcacctttttctcaatattaggatgtagatg |
307 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
51762714 |
gagtttgatatcacctttttttcaatattaggatgtagatg |
51762674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University