View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7076_low_7 (Length: 397)

Name: NF7076_low_7
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7076_low_7
NF7076_low_7
[»] chr3 (4 HSPs)
chr3 (14-381)||(16679344-16679712)
chr3 (51-105)||(16662354-16662409)
chr3 (289-337)||(19466264-19466312)
chr3 (289-340)||(18148709-18148760)
[»] chr6 (1 HSPs)
chr6 (14-48)||(14428914-14428948)
[»] chr4 (1 HSPs)
chr4 (17-59)||(22099534-22099576)
[»] chr2 (1 HSPs)
chr2 (14-48)||(29865475-29865509)
[»] chr8 (1 HSPs)
chr8 (14-54)||(33526048-33526088)
[»] chr7 (1 HSPs)
chr7 (17-57)||(20388642-20388682)
[»] chr5 (1 HSPs)
chr5 (12-48)||(25779124-25779160)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 16679712 - 16679344
Alignment:
Q  14 gaagcatattttcaaggactaaaaccatattttagacataaattaaagtagaaatcgtccaagatatcagggcatccaaaaa-ccctctcagattgttgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16679712 gaagcatattttcaaggactaaaaccatattttagacataaattaaagtagaaatcgtccaagatatcagggcatccaaaaaaccctctcagattgttgt 16679613  T
Q  113 tatctctttattgaattaagttataagattgtatataccatcattataaattagactttagacacttgaacaaaatttagcgactacgaatccagttatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16679612 tatctctttattgaattaagttataagattgtatataccatcattataaattagactttagacacttaaacaaaatttagcgactacgaatccagttatt 16679513  T
Q  213 agatatgacattataggnnnnnnnattctgtactacaaatcaaatcagatggcatattcacataatgtagattttgaagcagccaagtttttacacaaac 312  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16679512 agatatgacattataggtttttttattctgtactacaaatcaaatcagatggcatattcacataatgtagattttgaagcagccaagtttttacacaaac 16679413  T
Q  313 tcctattctgcaactatctgaataaactgataaaaagaagagatctacataacatgaggaattcacaat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16679412 tcctattctgcaactatctgaataaactgataaaaagaagagatctacataacatgaggaattcacaat 16679344  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 16662409 - 16662354
Alignment:
Q  51 ataaattaaagtagaaatcgtccaagatatca-gggcatccaaaaaccctctcaga 105  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  16662409 ataaattcaagttgaaatcgtccaagatatcaggggcatccaaagaccctctcaga 16662354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 19466312 - 19466264
Alignment:
Q  289 aagcagccaagtttttacacaaactcctattctgcaactatctgaataa 337  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| ||||    
T  19466312 aagcagcaaagtttctacacaaactcttattctgcaactatctgcataa 19466264  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 18148760 - 18148709
Alignment:
Q  289 aagcagccaagtttttacacaaactcctattctgcaactatctgaataaact 340  Q
    ||||||| || ||| ||||||||||| ||||||||||||||||| |||||||    
T  18148760 aagcagcaaaatttctacacaaactcttattctgcaactatctgcataaact 18148709  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 14428914 - 14428948
Alignment:
Q  14 gaagcatattttcaaggactaaaaccatattttag 48  Q
    ||||||||||| |||||||||||||||||||||||    
T  14428914 gaagcatatttgcaaggactaaaaccatattttag 14428948  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 22099576 - 22099534
Alignment:
Q  17 gcatattttcaaggactaaaaccatattttagacataaattaa 59  Q
    |||||||| || |||||||||||||||||||| ||||||||||    
T  22099576 gcatatttgcagggactaaaaccatattttagccataaattaa 22099534  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 29865475 - 29865509
Alignment:
Q  14 gaagcatattttcaaggactaaaaccatattttag 48  Q
    ||||||||||| |||||||||||||||||||||||    
T  29865475 gaagcatatttgcaaggactaaaaccatattttag 29865509  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 33526088 - 33526048
Alignment:
Q  14 gaagcatattttcaaggactaaaaccatattttagacataa 54  Q
    ||||||||||| || |||||||||||||||||||| |||||    
T  33526088 gaagcatatttgcagggactaaaaccatattttagccataa 33526048  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 20388642 - 20388682
Alignment:
Q  17 gcatattttcaaggactaaaaccatattttagacataaatt 57  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  20388642 gcatattttcagcgactaaaaccatattttagccataaatt 20388682  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 25779124 - 25779160
Alignment:
Q  12 atgaagcatattttcaaggactaaaaccatattttag 48  Q
    ||||||||||||| || ||||||||||||||||||||    
T  25779124 atgaagcatatttgcagggactaaaaccatattttag 25779160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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