View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7076_low_8 (Length: 368)
Name: NF7076_low_8
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 36677102 - 36677446
Alignment:
| Q |
16 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattcctta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36677102 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattcctta |
36677201 |
T |
|
| Q |
115 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36677202 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
36677301 |
T |
|
| Q |
215 |
aattgtaaaataataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaa |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36677302 |
aattgtaaaatcataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaa |
36677401 |
T |
|
| Q |
315 |
gagggaattcagaaatgtcatatgttggaggagtttgatgtccat |
359 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36677402 |
gagggagttcggaaatgtcatatgttggaggagtttgatgtccat |
36677446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 36687184 - 36687528
Alignment:
| Q |
16 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattcctta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36687184 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattcctta |
36687283 |
T |
|
| Q |
115 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36687284 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
36687383 |
T |
|
| Q |
215 |
aattgtaaaataataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaa |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36687384 |
aattgtaaaatcataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaa |
36687483 |
T |
|
| Q |
315 |
gagggaattcagaaatgtcatatgttggaggagtttgatgtccat |
359 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36687484 |
gagggagttcggaaatgtcatatgttggaggagtttgatgtccat |
36687528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 36665431 - 36665304
Alignment:
| Q |
23 |
cttattcatttgaattttccattacattacat--cat--ttgcgaatcgtaacttgaaatatcatcttaa-aagcacccaaaatctaagattccttatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| ||||| |
|
|
| T |
36665431 |
cttattcatttgaattttccattacattacattacatcattgtgaatcgtgacttgaaatatgatctttagaagcactcaaaatctaagattccatatac |
36665332 |
T |
|
| Q |
118 |
aatttacttaaacataataacaactaac |
145 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
36665331 |
aatttacttaaacataataaccactaac |
36665304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 36664931 - 36664849
Alignment:
| Q |
227 |
ataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactag |
309 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
36664931 |
ataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcgttcaacgacaccactag |
36664849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 36704362 - 36704438
Alignment:
| Q |
230 |
ggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
306 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| || ||||| |||||||||||| |||||| ||||| ||||| |
|
|
| T |
36704362 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
36704438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 36665022 - 36664986
Alignment:
| Q |
189 |
agtagatatatttgaagcacaataataattgtaaaat |
225 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
36665022 |
agtagatatattcgaagcacaataatagttgtaaaat |
36664986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University