View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7076_low_9 (Length: 366)
Name: NF7076_low_9
Description: NF7076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7076_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 25930698 - 25931046
Alignment:
| Q |
1 |
tatattttgtacttatatggatttgatagtcacctcatcattctaatcctctctctctatcggattcacaacatgtgttcataatctattccaataattt |
100 |
Q |
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| T |
25930698 |
tatattttgtacttatatggatttgatagtcacctcatcattctaatcctctctctctatcggattcacaacatgtgttcataatctattccaataattt |
25930797 |
T |
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| Q |
101 |
ccatctctcaatttctcaactttttacatgaaacaaaaatgaacaacttggattcctaccctccaattctccgccaacaaaacaaccaacaacaaaaccc |
200 |
Q |
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| T |
25930798 |
ccatctctcaatttctcaactttttacatgaaacaaaaatgaacaacttggattcctaccctccaattctccgccaacaaaacaaccaacaacaaaaccc |
25930897 |
T |
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| Q |
201 |
ttatgacccaaatgacacaattgaagactcagatcctattccaatcatagatcttaagtgcttagaacacaaaaatttggatgaggcttgcaaggaatgg |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25930898 |
ttatgaaccaaatgacacaattgaagactcagatcctattccaaccatagatcttaagtgcttagaacacaaaaatttggatgaggcttgcaaggaatgg |
25930997 |
T |
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| Q |
301 |
ggtctattccgtttgattaatcatggtgttccaataacccttttggaac |
349 |
Q |
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| T |
25930998 |
ggtctattccgtttgattaatcatggtgttccaataacccttttggaac |
25931046 |
T |
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