View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7077_low_3 (Length: 288)
Name: NF7077_low_3
Description: NF7077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7077_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 9028112 - 9027949
Alignment:
| Q |
18 |
agtgaaatcaaagtgcgccacgcgagttgtgaacttgtgacgaggttggacgataacccaataagccaaagtgaaataatttctatttgtattccaccac |
117 |
Q |
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| T |
9028112 |
agtgaaatcaaagtgcgctacgcgagttgtgaacttgtgacgaggttggacgataacctaataagccaaagggaaataacttctatttgtactccaccac |
9028013 |
T |
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| Q |
118 |
ttccttaactgactttcacgacaggcagctccttagtgcgtgaagcgagttgtgatgaggctag |
181 |
Q |
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| T |
9028012 |
ttccgtaactgactttcacgacaggcagctccttagtgcgtgacgcgagttgttacgaggctag |
9027949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 9018706 - 9018547
Alignment:
| Q |
22 |
aaatcaaagtgcgccacgcgagttgtgaacttgtgacgaggttggacgataacccaataagccaaagtgaaataatttctatttgtattccaccacttcc |
121 |
Q |
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| T |
9018706 |
aaatcaaagtgcgccacgcgagttgtgaacttgtgacgaggttggacgatgacccaataagccaaagggaaataatttctatttgtactccaccacttcc |
9018607 |
T |
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| Q |
122 |
ttaactgactttcacgacaggcagctccttagtgcgtgaagcgagttgtgatgaggctag |
181 |
Q |
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| T |
9018606 |
gtagttgactttcacgacaggcagctccttagtgcgcgatgcgagttgtgacaaggctag |
9018547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 8993431 - 8993267
Alignment:
| Q |
18 |
agtgaaatcaaagtgcgccacgcgagttgtgaacttgtgacgaggttggacgataacccaataagccaaagtgaaataatttctatttgtattccaccac |
117 |
Q |
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| T |
8993431 |
agtgaaatcaaagtgcgccacacgagttgtgaacttgtgacgaggttggacgataacccaataagccagagggaaataatttctatttgtactccaccac |
8993332 |
T |
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| Q |
118 |
ttccttaactgactttcacgacaggcagctccttagtgcgtgaa-gcgagttgtgatgaggctag |
181 |
Q |
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| T |
8993331 |
ttccgtatctgactttcacgacaggcagctccttagtgcgggaacgtgagttgtgacaaggctag |
8993267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 8993205 - 8993147
Alignment:
| Q |
207 |
gctccttagtgcacttgcaagttgtgagaaggctagacattttgaaattctttcaatgg |
265 |
Q |
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| T |
8993205 |
gctccttagtgcgcgcgcaagttgtgacaaggctagacattataaaattctttcaatgg |
8993147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 9018479 - 9018418
Alignment:
| Q |
202 |
acgcagctccttagtgcacttgcaagttgtgagaaggctagacattttgaaattctttcaat |
263 |
Q |
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| T |
9018479 |
acgccgctccttagtgcgagcgcaagttgtgacaaggctagacattatgaaattctttcaat |
9018418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 9027861 - 9027821
Alignment:
| Q |
225 |
aagttgtgagaaggctagacattttgaaattctttcaatgg |
265 |
Q |
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| T |
9027861 |
aagttgtgacaaggctagacattgtgaaattctttcaatgg |
9027821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 8987426 - 8987384
Alignment:
| Q |
223 |
gcaagttgtgagaaggctagacattttgaaattctttcaatgg |
265 |
Q |
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| T |
8987426 |
gcaagttgtgataaggctggacattatgaaattctttcaatgg |
8987384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 9018586 - 9018524
Alignment:
| Q |
204 |
gcagctccttagtgcact-tgcaagttgtgagaaggctagacattttgaaattctttcaatgg |
265 |
Q |
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| T |
9018586 |
gcagctccttagtgcgcgatgcgagttgtgacaaggctagacattctgaaattccttcaatgg |
9018524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 9017000 - 9016956
Alignment:
| Q |
113 |
accacttccttaactgactttcacgacaggcagctccttagtgcg |
157 |
Q |
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| T |
9017000 |
accacttccgtaactgactttcgcgacacacagctccttagtgcg |
9016956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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