View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7078_high_6 (Length: 271)

Name: NF7078_high_6
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7078_high_6
NF7078_high_6
[»] chr2 (9 HSPs)
chr2 (21-108)||(7688647-7688734)
chr2 (112-200)||(8164366-8164454)
chr2 (110-149)||(40746060-40746099)
chr2 (112-196)||(38739827-38739908)
chr2 (110-163)||(4976502-4976555)
chr2 (110-163)||(4994409-4994462)
chr2 (111-164)||(14404185-14404238)
chr2 (110-147)||(24383076-24383113)
chr2 (112-196)||(13389959-13390043)
[»] scaffold0057 (1 HSPs)
scaffold0057 (21-108)||(78615-78702)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-108)||(484074-484161)
[»] chr5 (13 HSPs)
chr5 (21-108)||(33260386-33260473)
chr5 (122-228)||(29314430-29314536)
chr5 (16-81)||(31560569-31560634)
chr5 (111-165)||(36219624-36219678)
chr5 (111-192)||(5747920-5748001)
chr5 (111-160)||(16689592-16689641)
chr5 (112-200)||(4301905-4301993)
chr5 (112-202)||(3309489-3309579)
chr5 (139-199)||(38735204-38735264)
chr5 (107-146)||(6803943-6803982)
chr5 (110-160)||(6804889-6804939)
chr5 (111-163)||(4555457-4555509)
chr5 (112-196)||(29412847-29412931)
[»] chr1 (9 HSPs)
chr1 (21-104)||(6191424-6191507)
chr1 (21-108)||(21873409-21873496)
chr1 (112-200)||(8562947-8563035)
chr1 (111-161)||(42383719-42383769)
chr1 (112-149)||(36152990-36153027)
chr1 (112-161)||(49420954-49421003)
chr1 (106-154)||(43317122-43317170)
chr1 (110-161)||(536736-536786)
chr1 (112-161)||(38688640-38688689)
[»] chr3 (4 HSPs)
chr3 (21-111)||(9009298-9009388)
chr3 (111-215)||(44064188-44064292)
chr3 (111-212)||(36232867-36232968)
chr3 (111-200)||(53714376-53714465)
[»] chr7 (9 HSPs)
chr7 (15-108)||(16434793-16434886)
chr7 (106-231)||(32438306-32438431)
chr7 (137-271)||(41905678-41905812)
chr7 (111-200)||(42250829-42250918)
chr7 (118-200)||(41886754-41886836)
chr7 (112-200)||(14629819-14629906)
chr7 (109-200)||(43014574-43014665)
chr7 (111-160)||(5064645-5064694)
chr7 (111-160)||(30513639-30513688)
[»] chr4 (7 HSPs)
chr4 (25-111)||(25034224-25034310)
chr4 (26-111)||(25028441-25028526)
chr4 (112-208)||(34372353-34372449)
chr4 (116-200)||(31681123-31681207)
chr4 (119-214)||(50261136-50261231)
chr4 (112-199)||(31805960-31806046)
chr4 (112-148)||(232061-232097)
[»] chr6 (1 HSPs)
chr6 (15-65)||(2947756-2947806)
[»] chr8 (7 HSPs)
chr8 (112-200)||(38660076-38660164)
chr8 (111-210)||(2455750-2455849)
chr8 (115-200)||(41649725-41649810)
chr8 (125-214)||(44838591-44838680)
chr8 (112-212)||(22631308-22631408)
chr8 (135-200)||(6015531-6015596)
chr8 (16-81)||(19178517-19178582)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 7688734 - 7688647
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  7688734 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcgtaggatttacatggtatgttt 7688647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 8164454 - 8164366
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||||||||||||||||||||   ||||| |||||||| ||||||||||| ||  ||| ||||| |||||||| || ||||||| ||||    
T  8164454 ggtggggtttagtatgggaaaagaaagttttttcccatcatggaaaagttgaatcacaaccatatatttaataattttttatttagatg 8164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 40746099 - 40746060
Alignment:
Q  110 aaggtggggtttagtatgggaaagagaagttctttcccat 149  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  40746099 aaggtggggtttagtatgggaaagagaacttctttcccat 40746060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 38739908 - 38739827
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttg 196  Q
    |||| ||||||| ||||||||| ||| ||||||||   |||||||||||||||  |||||||| ||||||||| || ||||||||    
T  38739908 ggtgaggtttagcatgggaaagggaaattctttcc---tatggaaaagttaaatcacagccattaatttaatagttttttatttg 38739827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 4976555 - 4976502
Alignment:
Q  110 aaggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaa 163  Q
    |||||| ||||||||||||| | |||||||| ||||||| ||||| ||||||||    
T  4976555 aaggtgaggtttagtatggggatgagaagttgtttcccactatgggaaagttaa 4976502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 4994462 - 4994409
Alignment:
Q  110 aaggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaa 163  Q
    |||||| ||||||||||||| | |||||||| ||||||| ||||| ||||||||    
T  4994462 aaggtgaggtttagtatggggatgagaagttgtttcccactatgggaaagttaa 4994409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 14404238 - 14404185
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaa 164  Q
    ||||||||||||| |||||||||| || |||||| || | ||||||||||||||    
T  14404238 aggtggggtttagcatgggaaagaaaaattcttttccttcatggaaaagttaaa 14404185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 24383113 - 24383076
Alignment:
Q  110 aaggtggggtttagtatgggaaagagaagttctttccc 147  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  24383113 aaggtggggtttagtatgggaaagggaagttgtttccc 24383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 13389959 - 13390043
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttg 196  Q
    |||| ||||||| ||| ||| ||||||||||||| ||| |||| |||||| ||  ||| |||| ||||||||| || ||||||||    
T  13389959 ggtgaggtttagcatgagaatgagaagttctttctcatgatgggaaagtttaatcacatccatcaatttaatagttttttatttg 13390043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 78702 - 78615
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgttt 108  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  78702 aactgaagatgacttatatgatttgcgaaatcaatgggcaacttgttttcttgacttgtataacgcgtaggatttacatggtatgttt 78615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 484161 - 484074
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  484161 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacacgtaggatttacatggtatgttt 484074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 33260473 - 33260386
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  33260473 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacacgtaggatttacatggtatgttt 33260386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 29314536 - 29314430
Alignment:
Q  122 agtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagatttatgacttagta 221  Q
    ||||||||||||  || ||||||||| | ||||||||||  ||||||| ||||| ||||| ||||| |||||||||||| || |||||||||||   |||    
T  29314536 agtatgggaaaggaaaattctttcccttcatggaaaagtataaggacaaccatagatttattacttctttatttggatggcctagatttatgacccggta 29314437  T
Q  222 aggggag 228  Q
    |||||||    
T  29314436 aggggag 29314430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31560569 - 31560634
Alignment:
Q  16 acatcaactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtat 81  Q
    |||| ||| |||||||| |||||||||||||||||  | |||||||||||||||||||||||||||    
T  31560569 acattaacagaagatgagttatatgatttgcgaaaggattgggcaacttgttttcttgacttgtat 31560634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 36219624 - 36219678
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaag 165  Q
    |||||| ||||||||||||||||| || ||||||||||| |||||||||||||||    
T  36219624 aggtggagtttagtatgggaaagaaaacttctttcccatgatggaaaagttaaag 36219678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 5747920 - 5748001
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttattta 192  Q
    ||||||||||||||||||||||||| ||||||||||| | |||| |||||| ||  || |||||| ||||| ||||| ||||    
T  5747920 aggtggggtttagtatgggaaagaggagttctttcccttcatgggaaagttgaaccacggccatagatttattactttttta 5748001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 16689592 - 16689641
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagt 160  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  16689592 aggtggggtttagtatgggaaagggaagttctttcccaccatggaaaagt 16689641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 4301905 - 4301993
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    ||||||||||| ||||| |||| ||||||||||||||| |||| |||||  ||  | ||||||| |||||||| || ||||||||||||    
T  4301905 ggtggggtttaatatggaaaagggaagttctttcccatcatgggaaagtcgaactaaagccatagatttaatatttttttatttggatg 4301993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 3309489 - 3309579
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgac 202  Q
    |||| ||||||| ||||||||| |||||||||||| || |||| |||||| ||  ||| |||| ||||||||| || || |||||||||||    
T  3309489 ggtgaggtttagcatgggaaagggaagttctttcctatgatgggaaagttcaaccacaaccatgaatttaatagtttttaatttggatgac 3309579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 38735204 - 38735264
Alignment:
Q  139 ttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggat 199  Q
    ||||||||||| |||||||| |||||  | |||||||||||||||| || |||||||||||    
T  38735204 ttctttcccatgatggaaaaattaaacaatagccataaatttaatatttgtttatttggat 38735264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 6803943 - 6803982
Alignment:
Q  107 ttcaaggtggggtttagtatgggaaagagaagttctttcc 146  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  6803943 ttcaaggtggggtttagtatgggaaagggaagttgtttcc 6803982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 6804889 - 6804939
Alignment:
Q  110 aaggtggggtttagtatgggaaagagaagttctttcccattatggaaaagt 160  Q
    |||||||||||||| ||||||||||| |||| |||||||  ||||||||||    
T  6804889 aaggtggggtttagcatgggaaagaggagttgtttcccaccatggaaaagt 6804939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 4555509 - 4555457
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaa 163  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||  ||||||||    
T  4555509 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaa 4555457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 29412931 - 29412847
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttg 196  Q
    |||| |||||| |||||||| | ||||||||||||||| |||  |||||| ||  ||| |||| ||||||||| || ||||||||    
T  29412931 ggtgaggtttaatatgggaatgggaagttctttcccatgatgagaaagtttaatcacatccatcaatttaatagttttttatttg 29412847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 6191424 - 6191507
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  6191424 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcgtaggatttacatggtat 6191507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 21873496 - 21873409
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  21873496 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacacgtaggatttacatggtatgttt 21873409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 8563035 - 8562947
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||||||||||||||||||||||| ||||||||||| | ||| ||||||| ||  ||| |||| |||||| || || |||| |||||||    
T  8563035 ggtggggtttagtatgggaaagaggagttctttcccttcatgaaaaagttgaaccacaaccatgaatttattaattttttaattggatg 8562947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 42383719 - 42383769
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagtt 161  Q
    |||||||||||||||||||||||||||||| ||||| || |||| ||||||    
T  42383719 aggtggggtttagtatgggaaagagaagttgtttcctatcatgggaaagtt 42383769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 36152990 - 36153027
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccat 149  Q
    |||||||||||||||||||||||||| |||||||||||    
T  36152990 ggtggggtttagtatgggaaagagaacttctttcccat 36153027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 49421003 - 49420954
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagtt 161  Q
    |||| ||||||||||||||||| |||||| |||||||| |||||||||||    
T  49421003 ggtgaggtttagtatgggaaagggaagttgtttcccatgatggaaaagtt 49420954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 43317170 - 43317122
Alignment:
Q  106 tttcaaggtggggtttagtatgggaaagagaagttctttcccattatgg 154  Q
    |||||||||||||||||| ||||||| |||||||| |||||||| ||||    
T  43317170 tttcaaggtggggtttagcatgggaatgagaagttgtttcccatcatgg 43317122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 536736 - 536786
Alignment:
Q  110 aaggtggggtttagtatgggaaagagaagttctttcccattatggaaaagtt 161  Q
    ||||||||||||||||||||||||  ||||| |||||||| |||||||||||    
T  536736 aaggtggggtttagtatgggaaaggaaagtt-tttcccatgatggaaaagtt 536786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 38688689 - 38688640
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagtt 161  Q
    ||||||||||| ||||||||||| ||||| |||||||| |||| ||||||    
T  38688689 ggtggggtttaatatgggaaagaaaagttgtttcccatgatgggaaagtt 38688640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 9009388 - 9009298
Alignment:
Q  21 aactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgtttcaa 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  9009388 aactgaagacgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataaagcttaggagttacatggtatgtttcaa 9009298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 44064188 - 44064292
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagattt 210  Q
    ||||||||| |||||||| |||| ||||||||||||||| |||| |||||| ||  ||| ||||| ||||||||||| |||||||| ||| |  ||||||    
T  44064188 aggtggggtatagtatggaaaagggaagttctttcccatcatgggaaagttgaaccacaaccatagatttaatacttttttatttgaatggctaagattt 44064287  T
Q  211 atgac 215  Q
    |||||    
T  44064288 atgac 44064292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 36232867 - 36232968
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagattt 210  Q
    |||||||||||||||||||||||  |||||||||||||| ||  ||||||| || |||| ||||  |||||||| |  ||||| |||||| |||||||||    
T  36232867 aggtggggtttagtatgggaaaggaaagttctttcccatgataaaaaagtttaatgacaaccattgatttaatattattttatatggatggcccagattt 36232966  T
Q  211 at 212  Q
    ||    
T  36232967 at 36232968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 53714465 - 53714376
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||||| |||||| ||||||||| ||| |||||||||| ||||| |||||| ||  ||| |||||| | ||||| |  ||||||||||||    
T  53714465 aggtggagtttagcatgggaaagggaaattctttcccactatgggaaagtttaaccacaaccataattataatagtattttatttggatg 53714376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 16434793 - 16434886
Alignment:
Q  15 gacatcaactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgttt 108  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  16434793 gacattaactgaagatgacttatatgatttgcgaaaccaatgagcaacttgttttcttgacttgtataacacgtaggatttacatggtatgttt 16434886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 32438306 - 32438431
Alignment:
Q  106 tttcaaggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgaccca 205  Q
    |||| |||||| ||||||||||| ||||   |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||    
T  32438306 tttcgaggtggagtttagtatggaaaaggagagttctttcccattatggaaaaattcaaggacagccatagatttaatacttatttatttggatggccca 32438405  T
Q  206 gatttatgacttagtaaggggagtaa 231  Q
    ||||||||||   |||||||||||||    
T  32438406 gatttatgacccggtaaggggagtaa 32438431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 41905812 - 41905678
Alignment:
Q  137 agttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagatttatgacttagtaaggggagtaannnnn 236  Q
    |||| |||||||| ||||||||||| ||||||| ||||| ||||||||||||||| ||||||||  || ||| |||||||| || || ||| |||         
T  41905812 agttatttcccatgatggaaaagttgaaggacaaccatatatttaatacttatttttttggatggtccggatatatgacttggtgagaggattaactttt 41905713  T
Q  237 nnatgggtattgtgaaccaataattttgaccccac 271  Q
      |||||||||||||||||||||||| ||||||||    
T  41905712 tgatgggtattgtgaaccaataatttcgaccccac 41905678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 42250829 - 42250918
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| || ||  | ||||||| |||||||| || ||||| ||||||    
T  42250829 aggtggagtttagtatgggaaagagaagttctttcccatgatggaaaaatttaaccatagccatagatttaatagttttttatatggatg 42250918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 41886754 - 41886836
Alignment:
Q  118 gtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||||| |||| |||| ||| ||||||||||| ||||||||||| ||| | ||||||| |||||||| || ||||||||||||    
T  41886754 gtttagcatggaaaagggaaattctttcccataatggaaaagtttaagcatagccatagatttaatagttttttatttggatg 41886836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 14629819 - 14629906
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    ||||| |||||||||||||||| |||||||||| |||| |||| |||||| ||  ||| ||||| |||||||| || ||||||||||||    
T  14629819 ggtggagtttagtatgggaaagggaagttcttttccatcatgggaaagttgaaccacaaccatagatttaatagtt-tttatttggatg 14629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 43014574 - 43014665
Alignment:
Q  109 caaggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    ||||||| |||||||||||||||||| |||||||||| ||| |||| |||||| ||  | ||||||  |||||||| || ||||| ||||||    
T  43014574 caaggtgaggtttagtatgggaaagaaaagttctttctcatgatgggaaagtttaataatagccattgatttaatatttttttatatggatg 43014665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 5064694 - 5064645
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagt 160  Q
    ||||||||||||| ||||||| | ||||||||||||||| |||| |||||    
T  5064694 aggtggggtttagcatgggaatgggaagttctttcccatcatgggaaagt 5064645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 30513639 - 30513688
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagt 160  Q
    |||| |||||||||||||||||| | |||| |||| ||||||||||||||    
T  30513639 aggtagggtttagtatgggaaaggggagttgtttctcattatggaaaagt 30513688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 25034224 - 25034310
Alignment:
Q  25 gaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgtttcaa 111  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||| ||||| ||||||||||||||    
T  25034224 gaagatgagttatatgatttgcgaaaccaatgggcaacttggtttcttgacttgtttaaagtttaggatttatatggtatgtttcaa 25034310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 25028526 - 25028441
Alignment:
Q  26 aagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtataacgcttagaatttacatggtatgtttcaa 111  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| ||||| ||||||||||||||    
T  25028526 aagatgagttatatgatttgcgaaaccaatgggtaacttgttttcctgacttgtttaaagcttaggatttatatggtatgtttcaa 25028441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 34372353 - 34372449
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagat 208  Q
    |||||||||||| ||||||| |||||||||||| |||| ||||||||||| ||  ||| ||||| |||||||| || ||||| || |||||| ||||    
T  34372353 ggtggggtttagcatgggaatgagaagttcttttccatgatggaaaagtttaacaacaaccatagatttaataattttttatgtgaatgacctagat 34372449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 31681207 - 31681123
Alignment:
Q  116 gggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    ||||||| ||||||||||  |||||||||||||| ||| ||||||| ||  ||| ||||||||||| || || ||||||||||||    
T  31681207 gggtttaatatgggaaaggaaagttctttcccatcatgtaaaagttgaaccacaaccataaatttattagttttttatttggatg 31681123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 50261231 - 50261136
Alignment:
Q  119 tttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagatttatga 214  Q
    ||||||||| ||||| | | ||||||||| |||||| |||||  ||| ||| ||||| ||||| ||||| |||||||||||| || ||||||||||    
T  50261231 tttagtatgagaaaggggaattctttccctttatgggaaagtataagtacaaccatagatttattacttctttatttggatggcctagatttatga 50261136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 31805960 - 31806046
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggat 199  Q
    ||||| ||||| ||| |||||| |||||||||| |||| |||| |||||| ||  ||| |||||||||||||| || |||||||||||    
T  31805960 ggtggagtttaatataggaaagggaagttcttttccatcatgggaaagttgaactacaaccataaatttaatagtt-tttatttggat 31806046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 232097 - 232061
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttccca 148  Q
    |||||||||||||||||||||| |||||| |||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttccca 232061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 2947806 - 2947756
Alignment:
Q  15 gacatcaactgaagatgacttatatgatttgcgaaaccaatgggcaacttg 65  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2947806 gacattaactgaagatgacttatatgatttgcgaaaccaatgggcaacttg 2947756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 38660076 - 38660164
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||| ||||||||||||||||| |||||| |||||| | |||| |||||| ||  ||| |||||||||||||| || ||||||||||||    
T  38660076 ggtgaggtttagtatgggaaagggaagttgtttcccttgatgggaaagtttaaccacaaccataaatttaatagttttttatttggatg 38660164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 2455750 - 2455849
Alignment:
Q  111 aggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagattt 210  Q
    ||||| ||||||||||||||||| |||||||||| ||||||| | |||||| ||  ||| |||| ||||||||| || ||||| |||||| |||| ||||    
T  2455750 aggtgaggtttagtatgggaaagggaagttcttttccattataggaaagtttaataacaaccattaatttaatatttttttatgtggatggcccatattt 2455849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 41649810 - 41649725
Alignment:
Q  115 ggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    |||||||| ||| |||||| ||||||||||||||| |||| |||||  ||  | ||||||| |||||||| || ||||||||||||    
T  41649810 ggggtttaatataggaaagggaagttctttcccatcatgggaaagtcgaactatagccatagatttaatatttttttatttggatg 41649725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 44838680 - 44838591
Alignment:
Q  125 atgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagatttatga 214  Q
    |||||||||  || ||||||||| ||||||||||||  ||| | || | || ||||| ||||| ||||||||||||||| ||||||||||    
T  44838680 atgggaaaggaaaattctttccctttatggaaaagtataagaagagtcgtagatttattacttctttatttggatgacctagatttatga 44838591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 22631308 - 22631408
Alignment:
Q  112 ggtggggtttagtatgggaaagagaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatgacccagattta 211  Q
    ||||||||||||||| ||||||  ||||||||| |||| |||| ||| || || |||| ||||  |||||||| |  ||||| |||||| ||||||||||    
T  22631308 ggtggggtttagtattggaaaggaaagttcttttccatgatgggaaaatttaatgacaaccattgatttaatattattttatatggatggcccagattta 22631407  T
Q  212 t 212  Q
    |    
T  22631408 t 22631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 6015596 - 6015531
Alignment:
Q  135 gaagttctttcccattatggaaaagttaaaggacagccataaatttaatacttatttatttggatg 200  Q
    ||||||||||||||| ||||||||||| ||  | || |||| |||||||| | |||||||||||||    
T  6015596 gaagttctttcccatgatggaaaagtttaacaagagtcatagatttaatagtaatttatttggatg 6015531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 19178582 - 19178517
Alignment:
Q  16 acatcaactgaagatgacttatatgatttgcgaaaccaatgggcaacttgttttcttgacttgtat 81  Q
    |||| ||| ||||||||  | |||| |||||||||| | |||||||||||||||||||| ||||||    
T  19178582 acattaacagaagatgagctgtatgctttgcgaaacgattgggcaacttgttttcttgaattgtat 19178517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University