View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7078_high_9 (Length: 250)
Name: NF7078_high_9
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7078_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28036992 - 28036755
Alignment:
| Q |
1 |
aactcgcaggccttcttcgacaagctgcaaggaatagcaatgacctatatgaacgtcccacaagacgaatcatcgatgacactgaacaagtcctcgacaa |
100 |
Q |
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| T |
28036992 |
aactcgcaggccttcttcgacaagctgcaaggaatagcaatgacctatatgaacgtcccacaagacgaatcatcgatgacacagaacaagtcctcgacaa |
28036893 |
T |
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| Q |
101 |
agcccttggattagtcatgaaatgtcgtgtaaacggcataaaacgtctcttcaccatcattcccaccgccgcctttcgcaaaacctcaatgcagttagaa |
200 |
Q |
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| T |
28036892 |
agcccttggattagtcatgaaatgtcgtgtaaacggcataaaacgtctcttcaccatcattcccaccaccgcctttcgcaaaacctcaatgcagttagaa |
28036793 |
T |
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| Q |
201 |
aattcccttggagatgttcaatggttgttaagagtctc |
238 |
Q |
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| T |
28036792 |
aattcccttggagatattcaatggttgttaagagtctc |
28036755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 8756206 - 8756284
Alignment:
| Q |
51 |
gaacgtcccacaagacgaatcatcgatgacactgaacaagtcctcgacaaagcccttggattagtcatgaaatgtcgtg |
129 |
Q |
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| T |
8756206 |
gaacgtccaacaaaacggatcatcgaagaaacagaacaagtactcgacaaagcactttcattagtcctaaaatgtcgtg |
8756284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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