View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7078_low_14 (Length: 244)
Name: NF7078_low_14
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7078_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15329687 - 15329449
Alignment:
| Q |
1 |
ccagcactgaataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctccaaattctttctgtgcaaatatattttagtcttta |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
15329687 |
ccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtcttta |
15329588 |
T |
|
| Q |
101 |
ccaacgatagaagctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
15329587 |
ccaacgatagaagctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaattgtgtttcctgcctcatccctctcgtttaatattctact |
15329488 |
T |
|
| Q |
201 |
ctccagctctttagcgccactccgttcatattcttcgag |
239 |
Q |
| |
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|| | ||||||||||||| ||||||| || || |||||| |
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| T |
15329487 |
cttccgctctttagcgcccctccgtttatttttttcgag |
15329449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15510056 - 15509818
Alignment:
| Q |
1 |
ccagcactgaataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctccaaattctttctgtgcaaatatattttagtcttta |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
15510056 |
ccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtcttta |
15509957 |
T |
|
| Q |
101 |
ccaacgatagaagctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
15509956 |
ccaacgatagaagctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaattgtgtttcctgcctcatccctctcgtttaatattctact |
15509857 |
T |
|
| Q |
201 |
ctccagctctttagcgccactccgttcatattcttcgag |
239 |
Q |
| |
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|| | ||||||||||||| ||||||| || || |||||| |
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| T |
15509856 |
cttccgctctttagcgcccctccgtttatttttttcgag |
15509818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28865784 - 28865546
Alignment:
| Q |
1 |
ccagcactgaataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctccaaattctttctgtgcaaatatattttagtcttta |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
28865784 |
ccagcactgaataatatactcttaatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgcgcaaatttattttagtcttta |
28865685 |
T |
|
| Q |
101 |
ccaacgatagaagctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctact |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28865684 |
ccaacgatagaagctcctgcactaccagtggttcactacttagtgctgcaacatgtaaaatactgtttcctgcctcatccttctcgtttaatattctact |
28865585 |
T |
|
| Q |
201 |
ctccagctctttagcgccactccgttcatattcttcgag |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||| |
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| T |
28865584 |
ctccagctcttcagcgccactccgttcatttttttcgag |
28865546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 14727579 - 14727509
Alignment:
| Q |
5 |
cactgaataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctccaaattcttt |
75 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||| ||| || ||||||||||| ||||||||||||||| |
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| T |
14727579 |
cacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctccaaattcttt |
14727509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 30648716 - 30648656
Alignment:
| Q |
5 |
cactgaataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctc |
65 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||| || ||||| ||||| ||||| |
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| T |
30648716 |
cacttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctc |
30648656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 6611123 - 6611221
Alignment:
| Q |
7 |
ctgaataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaac |
105 |
Q |
| |
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|||||||| |||||||||||| ||| |||||||||| || ||||||||||| ||||||| ||| || ||| ||||| ||||||||||||||||||| |
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| T |
6611123 |
ctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaac |
6611221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 6611950 - 6612008
Alignment:
| Q |
137 |
tacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatatt |
195 |
Q |
| |
|
|||||||||||| ||| || ||||| ||||| |||||||||||| ||| |||||||||| |
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| T |
6611950 |
tacttagtgctgaaatatgcaaaatggtgttgcctgcctcatccctcttgtttaatatt |
6612008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 26086675 - 26086740
Alignment:
| Q |
10 |
aataatatactcttgatctcgggaatgcttgctatttccaatgctgttttattctccaaattcttt |
75 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| || ||||||||||| ||||||||||||||| |
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| T |
26086675 |
aataatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattcttt |
26086740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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