View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7078_low_15 (Length: 242)

Name: NF7078_low_15
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7078_low_15
NF7078_low_15
[»] chr3 (3 HSPs)
chr3 (1-242)||(11015423-11015664)
chr3 (3-242)||(11024435-11024674)
chr3 (13-242)||(11005860-11006089)
[»] chr4 (22 HSPs)
chr4 (65-108)||(48735423-48735466)
chr4 (147-208)||(49044140-49044201)
chr4 (148-208)||(48852734-48852794)
chr4 (38-128)||(48891385-48891472)
chr4 (65-108)||(48147758-48147801)
chr4 (66-124)||(7877727-7877785)
chr4 (65-119)||(48170592-48170646)
chr4 (65-111)||(48902929-48902975)
chr4 (159-208)||(7877807-7877856)
chr4 (159-208)||(7908398-7908447)
chr4 (168-209)||(48705329-48705370)
chr4 (168-209)||(48735352-48735393)
chr4 (68-124)||(7908325-7908381)
chr4 (58-105)||(48156465-48156512)
chr4 (66-108)||(7237764-7237806)
chr4 (66-108)||(7771396-7771438)
chr4 (66-108)||(7773858-7773900)
chr4 (66-108)||(7790081-7790123)
chr4 (163-208)||(7773776-7773821)
chr4 (63-108)||(48875841-48875886)
chr4 (158-198)||(45366187-45366227)
chr4 (157-197)||(45372033-45372073)
[»] chr8 (1 HSPs)
chr8 (148-204)||(4031858-4031914)
[»] chr5 (1 HSPs)
chr5 (161-208)||(179112-179159)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11015664 - 11015423
Alignment:
Q  1 tggacatcacaaacaaataccttttcctgcttccaatttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015664 tggacatcacaaacaaataccttttcctgcttccaatttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattac 11015565  T
Q  101 ttggtggtatccgtgtcctataatacaagtatagacccagtagaagataatatttcttcacatttgaagtttttctcattgagagctaatacatggaacg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015564 ttggtggtatcagtgtcctataatacaagtatagacccagtagacgataatatttcttcacatttgaagtttttctcattgagagctaatacatggaacg 11015465  T
Q  201 aaattgagtgtcctggatttgtaaagtataataacttccctt 242  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  11015464 aaattgagtgtcctggatttgtaaagtataatcacttccctt 11015423  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 11024674 - 11024435
Alignment:
Q  3 gacatcacaaacaaataccttttcctgcttccaatttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattactt 102  Q
    ||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  11024674 gacatcacaagaaaataccatttcctccttccaatttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattactt 11024575  T
Q  103 ggtggtatccgtgtcctataatacaagtatagacccagtagaagataatatttcttcacatttgaagtttttctcattgagagctaatacatggaacgaa 202  Q
    ||||||||| ||||||||| |||  |||||||||| | | ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  11024574 ggtggtatcagtgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgagagctaatacatggaacgaa 11024475  T
Q  203 attgagtgtcctggatttgtaaagtataataacttccctt 242  Q
    |||||||||| |||||| || ||||||||  |||||||||    
T  11024474 attgagtgtcttggattggtgaagtataagcacttccctt 11024435  T

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Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 11006089 - 11005860
Alignment:
Q  13 acaaataccttttcctgcttccaatttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattacttggtggtatcc 112  Q
    |||||||||||||||| |||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||     
T  11006089 acaaataccttttcctccttccaatttagatgcaaaatatgtatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatca 11005990  T
Q  113 gtgtcctataatacaagtatagacccagtagaagataatatttcttcacatttgaagtttttctcattgagagctaatacatggaacgaaattgagtgtc 212  Q
    ||||||||| ||| |||| |||||||| | |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  11005989 gtgtcctatgataaaagtgtagacccaattgaagataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtc 11005890  T
Q  213 ctggatttgtaaagtataataacttccctt 242  Q
     |||||| || ||||||| | |||||||||    
T  11005889 atggattggtgaagtatactcacttccctt 11005860  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 48735466 - 48735423
Alignment:
Q  65 tatggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggt 48735423  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 49044201 - 49044140
Alignment:
Q  147 ataatatttcttcacatttgaagtttttctcattgagagctaatacatggaacgaaattgag 208  Q
    |||||||||| | ||||||| |||||||||||||||||| ||||| |||||| |||||||||    
T  49044201 ataatatttcattacatttggagtttttctcattgagagataatagatggaatgaaattgag 49044140  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 48852734 - 48852794
Alignment:
Q  148 taatatttcttcacatttgaagtttttctcattgagagctaatacatggaacgaaattgag 208  Q
    |||| |||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||||    
T  48852734 taatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattgag 48852794  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 48891385 - 48891472
Alignment:
Q  38 ttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattacttggtggtatccgtgtcctataatacaa 128  Q
    ||||||||||| |||| ||||| ||| ||||||||| |||||||    |||||||||||||| |||||||| || ||||||||| ||||||    
T  48891385 ttagatgccaactatttatgttatctatatggttttaggtatgag---ttaagagatgattagttggtggtttcagtgtcctatgatacaa 48891472  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 48147801 - 48147758
Alignment:
Q  65 tatggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggt 48147758  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 7877727 - 7877785
Alignment:
Q  66 atggttttgggtatgaccatttaagagatgattacttggtggtatccgtgtcctataat 124  Q
    |||||||||| |||||||| | ||||||||||||||||||||| ||  |||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcctataat 7877785  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 48170646 - 48170592
Alignment:
Q  65 tatggttttgggtatgaccatttaagagatgattacttggtggtatccgtgtcct 119  Q
    ||||||||||||||||| || ||||||||||||||||| ||||| || |||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcct 48170592  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 48902929 - 48902975
Alignment:
Q  65 tatggttttgggtatgaccatttaagagatgattacttggtggtatc 111  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||    
T  48902929 tatggttttgggtatgaccactcaagagatgattacttgatggtatc 48902975  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 7877807 - 7877856
Alignment:
Q  159 cacatttgaagtttttctcattgagagctaatacatggaacgaaattgag 208  Q
    |||||||||||||||||||||| |||| |||||||||||| |||| ||||    
T  7877807 cacatttgaagtttttctcatttagagataatacatggaaagaaactgag 7877856  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 7908398 - 7908447
Alignment:
Q  159 cacatttgaagtttttctcattgagagctaatacatggaacgaaattgag 208  Q
    |||||||||||||||||||| | |||| |||||||||||| |||||||||    
T  7908398 cacatttgaagtttttctcagttagagataatacatggaaagaaattgag 7908447  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 48705370 - 48705329
Alignment:
Q  168 agtttttctcattgagagctaatacatggaacgaaattgagt 209  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  48705370 agtttttctcattgagagttaatacatggaaagaaattgagt 48705329  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 48735393 - 48735352
Alignment:
Q  168 agtttttctcattgagagctaatacatggaacgaaattgagt 209  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  48735393 agtttttctcattgagagctaatacctggaaagaaattgagt 48735352  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 7908325 - 7908381
Alignment:
Q  68 ggttttgggtatgaccatttaagagatgattacttggtggtatccgtgtcctataat 124  Q
    |||||||| |||||||| | ||||||||||||||||||||| ||  |||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctataat 7908381  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 48156512 - 48156465
Alignment:
Q  58 ttgtctgtatggttttgggtatgaccatttaagagatgattacttggt 105  Q
    |||||| ||||| ||||||||||| || ||||||||||||||||||||    
T  48156512 ttgtctatatggatttgggtatgatcaattaagagatgattacttggt 48156465  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 7237806 - 7237764
Alignment:
Q  66 atggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    |||||||||| |||||||| | |||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggt 7237764  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 7771396 - 7771438
Alignment:
Q  66 atggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    |||||||||| |||||||| | |||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggt 7771438  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 7773900 - 7773858
Alignment:
Q  66 atggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    |||||||||| ||||||||  ||||||||||||||||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggt 7773858  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 7790081 - 7790123
Alignment:
Q  66 atggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    |||||||||| |||||||| | |||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggt 7790123  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 7773821 - 7773776
Alignment:
Q  163 tttgaagtttttctcattgagagctaatacatggaacgaaattgag 208  Q
    |||||||||||||||||| |||| |||||||||||| |||| ||||    
T  7773821 tttgaagtttttctcatttagagataatacatggaaagaaactgag 7773776  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 48875841 - 48875886
Alignment:
Q  63 tgtatggttttgggtatgaccatttaagagatgattacttggtggt 108  Q
    ||||||||||||||||||| || |||  ||||||||||||||||||    
T  48875841 tgtatggttttgggtatgatcagttagcagatgattacttggtggt 48875886  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 45366227 - 45366187
Alignment:
Q  158 tcacatttgaagtttttctcattgagagctaatacatggaa 198  Q
    ||||| ||| || ||||||||||||||||||||||||||||    
T  45366227 tcacacttggagattttctcattgagagctaatacatggaa 45366187  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 45372073 - 45372033
Alignment:
Q  157 ttcacatttgaagtttttctcattgagagctaatacatgga 197  Q
    |||||||||| |||||||||||||||||| |||||| ||||    
T  45372073 ttcacatttggagtttttctcattgagagataatacttgga 45372033  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 4031914 - 4031858
Alignment:
Q  148 taatatttcttcacatttgaagtttttctcattgagagctaatacatggaacgaaat 204  Q
    ||||||||| ||||||||| ||||||||||| ||||||| || |||||||| |||||    
T  4031914 taatatttcatcacatttggagtttttctcactgagagccaacacatggaaagaaat 4031858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 179112 - 179159
Alignment:
Q  161 catttgaagtttttctcattgagagctaatacatggaacgaaattgag 208  Q
    |||||| || ||||||||||||||| |||||||||||| |||||||||    
T  179112 catttggagattttctcattgagagataatacatggaaagaaattgag 179159  T

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