View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7078_low_2 (Length: 743)
Name: NF7078_low_2
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7078_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 34956402 - 34955979
Alignment:
| Q |
1 |
atgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcattttactttgaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34956402 |
atgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcattttactttgaagtg |
34956303 |
T |
|
| Q |
101 |
tttatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatggagaatatattggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34956302 |
tttatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatggagaatatattggc |
34956203 |
T |
|
| Q |
201 |
gtctttcccttcagagtatcataagctagctttggaggataaattaaatgttacagaggattcaaaaagaccagcaccgtcatccgggggatgtagaatt |
300 |
Q |
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| T |
34956202 |
gtctttcccttcagagtattataagctagctttggaggataaattaaatgttacagaggattcaaaaagaccagcaccgtcatccgggggatgtagaatt |
34956103 |
T |
|
| Q |
301 |
gaaggatatgtacgtgtcaagaaggtaaactcgcatacggataaaatttaccttctaattctagtgtaatgtggaaaacttcttttgttgcttcctagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34956102 |
gaaggatatgtacgtgtcaagaaggtaaactcgcatacggataaaatttaccttctaattctagtgtaatgtggaaaacttcttttgttgcttcctagtt |
34956003 |
T |
|
| Q |
401 |
ttcaggtgtgagtatgaaccaaga |
424 |
Q |
| |
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| T |
34956002 |
ttcaggtgtgagtatgaaccaaga |
34955979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 460 - 730
Target Start/End: Complemental strand, 34955943 - 34955671
Alignment:
| Q |
460 |
gcattataatagaagcttcagttgtcaatattataacagcagaaataaatgatataatatacggcatatgacttcctattatttttctct--gtatttta |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34955943 |
gcattataatagaagcttcagttgtcaatattataacagcagaaataaatgatataatatacggcatatgacttcctattatttttctctctgtatttta |
34955844 |
T |
|
| Q |
558 |
aatattatgccgaaacgtaagctgttttgcactctgcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaa |
657 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34955843 |
aatattatgccgaaacataagctgttttgcactctgcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaa |
34955744 |
T |
|
| Q |
658 |
tgaacatgtcgcatgccatacaccatttatcttttggaaagaaattgtcacctaagcttatgagtgatgtcca |
730 |
Q |
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| T |
34955743 |
tgaacatgtcgcatgccgtacaccatttatcttttggaaagaaattgtcacctaagcttatgagtgatgtcca |
34955671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 592 - 711
Target Start/End: Original strand, 31391666 - 31391785
Alignment:
| Q |
592 |
tgcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccatacaccatttatcttt |
691 |
Q |
| |
|
||||||||||||||| |||| | ||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||| |
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| T |
31391666 |
tgcaggttccaggaagcttggttgtctcagctagatcagatgcacattcatttgatgcttctcaaatgaacatgtcacatgtcatcaaccatctatcttt |
31391765 |
T |
|
| Q |
692 |
tggaaagaaattgtcaccta |
711 |
Q |
| |
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|||||| ||| || |||||| |
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| T |
31391766 |
tggaaaaaaagtgacaccta |
31391785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 31391257 - 31391327
Alignment:
| Q |
263 |
caaaaagaccagcaccgtcatccgggggatgtagaattgaaggatatgtacgtgtcaagaaggtaaactcg |
333 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||| || |||||||||||| |
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| T |
31391257 |
caaaaagaccagcaccgtcaaccggtggatgtagagttgagggatatgtgcgtgtgaaaaaggtaaactcg |
31391327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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