View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7078_low_3 (Length: 650)
Name: NF7078_low_3
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7078_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 152 - 639
Target Start/End: Original strand, 434350 - 434839
Alignment:
| Q |
152 |
ggaaatggcttcctcaattgtaaaagaacttnnnnnnnnn--gacttaaattatacttatgaaaaagaactgacctaaactagagtacataatttgaatc |
249 |
Q |
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| T |
434350 |
ggaaatggcttcctcaattgtaaaagaactttaaaaaaaaaagacttaaattatacttaggaaaaagaactgacctaaactagagtacataatttgaaac |
434449 |
T |
|
| Q |
250 |
aaattacagtatatatttggattacacaaacttcagtttatgttaacatgtcaaataataatccttaatccataaatacacatttcagtgaaaatttgat |
349 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
434450 |
aaattacagtatatatttggattacacaatcttcattttatgttaacatgtcaaatattaatccttaatccataattacacatttcagtgaaaatttgat |
434549 |
T |
|
| Q |
350 |
tcaattgagactaatgcccaattcaatggcaatggtataactaatcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaa |
449 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
434550 |
tcaattgagactaacgcccaattcaatggcaatggtataactaatcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaa |
434649 |
T |
|
| Q |
450 |
tgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaatttaattctaacaaaaacactaattaactgaagcaaa |
549 |
Q |
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| T |
434650 |
tgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaatttaattctcacaaaaacactaattaactgaagcaaa |
434749 |
T |
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| Q |
550 |
cgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaagacaacgaaaa-ccctaatcttaaaatgagatccatgatgtcc |
639 |
Q |
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| T |
434750 |
cgcgaaaaactacctttgaaaatctgggcgacatccatgaaattggaagacgacgaaaatccctaatctt-aaatgagatccatgatgtcc |
434839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 434162 - 434316
Alignment:
| Q |
1 |
cagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttg |
100 |
Q |
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| T |
434162 |
cagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttgactgtcttaatcataaatctgtcatcttg |
434261 |
T |
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| Q |
101 |
ggtcaagtggaagaaaattccaattttgccaggagattaaagctacctgagggaa |
155 |
Q |
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| T |
434262 |
ggtcaagtggaagaaaattccacttttgccaggagattaaagctccctgagggaa |
434316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 235 - 399
Target Start/End: Original strand, 43485622 - 43485786
Alignment:
| Q |
235 |
tacataatttgaatcaaattacagtatatatttggattacacaaacttcagtttatgttaacatgtcaaataataatccttaatccataaatacacattt |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||| || |||||| | |
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| T |
43485622 |
tacataatttgaatcaaattacagtatatatttggcttacacaaacttcaatttatggtaacatgtcaaattttaatccttaatccagaattacacagct |
43485721 |
T |
|
| Q |
335 |
cagtgaaaatttgattcaattgagactaatgcccaattcaatggcaatggtataactaatcttca |
399 |
Q |
| |
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| T |
43485722 |
cagtgtaaatttgattcagttgagactaaagctcaattcaatggcaatggtataactaatcttca |
43485786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 32938610 - 32938459
Alignment:
| Q |
2 |
agtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgg |
101 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||| |
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| T |
32938610 |
agtttgaacaaacatggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttcaccgtctttatcataaatctatcatcttgg |
32938511 |
T |
|
| Q |
102 |
gtcaagtggaagaaaattccaattttgccaggagattaaagctacctgaggg |
153 |
Q |
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||||||| |||||| ||||| |||||||||||||| |||||| |||||||| |
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| T |
32938510 |
gtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgaggg |
32938459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 47870624 - 47870681
Alignment:
| Q |
313 |
cttaatccataaatacacatttcagtgaaaatttgattcaattgagactaatgcccaa |
370 |
Q |
| |
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||||||||| || |||| | ||||||||||||||||||||||||||||||| |||||| |
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| T |
47870624 |
cttaatccagaattacataattcagtgaaaatttgattcaattgagactaaagcccaa |
47870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 359 - 519
Target Start/End: Complemental strand, 17512942 - 17512780
Alignment:
| Q |
359 |
actaatgcccaattcaatggcaatggtataa--ctaatcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaa |
456 |
Q |
| |
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||||| ||| |||||||||||||||||| || ||||| |||||| | |||||||||||| |||||| ||| || |||||||||||||||||||||| |
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| T |
17512942 |
actaacgcctaattcaatggcaatggtacaaaactaatgttcaatgagattgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaa |
17512843 |
T |
|
| Q |
457 |
ggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaatttaatt |
519 |
Q |
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|||| |||||| | | |||||||||||||| | || |||||||| |||||| ||||| |||| |
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| T |
17512842 |
ggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatgaattgaattcaatt |
17512780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 525 - 598
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
525 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
598 |
Q |
| |
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||||||| ||| |||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 24524459 - 24524401
Alignment:
| Q |
50 |
aaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgggtcaagt |
108 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
24524459 |
aaccttgacttcagatttcttcactgtcttaatcatgaatctgtcatcttgggtcaagt |
24524401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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