View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7078_low_4 (Length: 585)
Name: NF7078_low_4
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7078_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 291 - 572
Target Start/End: Original strand, 2425142 - 2425427
Alignment:
| Q |
291 |
ttgatgccaatttaattgtatacaattac----agaacttaagattttccaattccaacaacattgttatgaatggtgtaacatccttgaatagccaaat |
386 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425142 |
ttgatgccaattttattgtatacaattacgtacagaacttaagattttccaattccaacaacattgttatgaatggtgtaacatccttgaatagccaaat |
2425241 |
T |
|
| Q |
387 |
gttccacatagtgatagacagatgcaataatgtgaaagtacaaggggttaaggtaacagcagcaggaaatagtcccaacactgatggtattcatgttcaa |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425242 |
gttccacatagtgatagacagatgcaataatgtgaaagtacaaggggttaaggtaacagcagcaggaaatagtcccaacactgatggtattcatgttcaa |
2425341 |
T |
|
| Q |
487 |
ctctcatcaagtgtcaccatcctcaactccaacatagaaacaggtgatgattgcatctcgattgggtctggaacaacaaatttgtg |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425342 |
ctctcatcaagtgtcaccatcctcaactccaacatagaaaccggcgatgattgcatctcgattgggtctggaacaacaaatttgtg |
2425427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 2424787 - 2425106
Alignment:
| Q |
5 |
gatcaatatgagttgtccgttgactacatgcaatcaactacacagatatatagttcgttcaattaatttactacgatcgcaattttta------------ |
92 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2424787 |
gatcaatacgagttgtccgttgactacatgcaattaactacaccgata----gttcgttcaattaatttactatgatcgcaatttttaaatcgtagttta |
2424882 |
T |
|
| Q |
93 |
gatctaaaaatattgaaat------------ccaaacatcgatctagtcttgatcga-caataataaatttgattgactgcagtaagttatatgattgta |
179 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2424883 |
gatctaaaaatattgaaatatgcattgaaatccaaacatcgatctagtcttgatcgaacaatcataaatttgattgactgcagttagttatatgattgta |
2424982 |
T |
|
| Q |
180 |
actacgcacaatccaacctacttatagtaatacaatcttctaagtctaattacgattctttatgacacttatttggtgaaatctaggtagatctatgaac |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2424983 |
actacgcacaatccaacctacttatagtaatacaatcttctaagtctaattacgattctttatgacacttatttggtgaaatctaggtagatctatgaac |
2425082 |
T |
|
| Q |
280 |
tcatagtattattgatgccaattt |
303 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2425083 |
tcatagtattattgatgccaattt |
2425106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University