View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7078_low_7 (Length: 310)

Name: NF7078_low_7
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7078_low_7
NF7078_low_7
[»] chr8 (11 HSPs)
chr8 (5-293)||(15329798-15330086)
chr8 (5-293)||(15510167-15510455)
chr8 (1-293)||(28865888-28866180)
chr8 (25-186)||(14727723-14727884)
chr8 (25-179)||(28693130-28693285)
chr8 (82-189)||(29552811-29552918)
chr8 (22-182)||(30648848-30649008)
chr8 (22-185)||(26089190-26089356)
chr8 (30-155)||(26090197-26090318)
chr8 (25-182)||(27714308-27714465)
chr8 (84-159)||(24509349-24509424)
[»] chr1 (1 HSPs)
chr1 (3-186)||(26086371-26086557)
[»] chr7 (2 HSPs)
chr7 (22-192)||(6610834-6611007)
chr7 (25-182)||(17292597-17292754)
[»] chr3 (1 HSPs)
chr3 (25-162)||(4819876-4820013)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 15329798 - 15330086
Alignment:
Q  5 acataacaggggaggatcgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatca 104  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  15329798 acataacaggggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatca 15329897  T
Q  105 gattagtgctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgtcatgcctagatttgatttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |  |||||||    
T  15329898 gattagtgctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctatcttgtctaaaactgatttc 15329997  T
Q  205 atgatgttttcaggtttgaatatgatgtcctttatcatatcatttataactataattaatatgacaccaagtcgggatcaaggtatttt 293  Q
    | || |||||||| |||||||||| | |||||| |||| |||||| |||| ||||||| ||||||||||| |||||| | |||||||||    
T  15329998 acgacgttttcagttttgaatatgttttcctttttcatgtcatttctaacaataattattatgacaccaactcgggagccaggtatttt 15330086  T

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Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 15510167 - 15510455
Alignment:
Q  5 acataacaggggaggatcgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatca 104  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  15510167 acataacaggggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatca 15510266  T
Q  105 gattagtgctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgtcatgcctagatttgatttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |  |||||||    
T  15510267 gattagtgctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctatcttgtctaaaactgatttc 15510366  T
Q  205 atgatgttttcaggtttgaatatgatgtcctttatcatatcatttataactataattaatatgacaccaagtcgggatcaaggtatttt 293  Q
    | || |||||||| |||||||||| | |||||| |||| |||||| |||| ||||||| ||||||||||| |||||| | |||||||||    
T  15510367 acgacgttttcagttttgaatatgttttcctttttcatgtcatttctaacaataattattatgacaccaactcgggagccaggtatttt 15510455  T

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Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 28865888 - 28866180
Alignment:
Q  1 actgacataacaggggaggatcgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggacttt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||    
T  28865888 actgacataacaggggaggaacgtaacacttggttagtagttgcgactcttattgcaactaccatgttcgaatcaactctgagtccccctggtggatttt 28865987  T
Q  101 atcagattagtgctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgtcatgcctagatttga 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |  |||    
T  28865988 atcagattagttctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgtcttgtctataaatga 28866087  T
Q  201 tttcatgatgttttcaggtttgaatatgatgtcctttatcatatcatttataactataattaatatgacaccaagtcgggatcaaggtatttt 293  Q
    ||||| |  |||||||| ||||||||||   |||||| || |||||||| |||| ||| ||| ||||| ||||||||||  ||||||| ||||    
T  28866088 tttcacgtcgttttcagttttgaatatggcttcctttttcgtatcatttctaacaatacttattatgataccaagtcggcgtcaaggtctttt 28866180  T

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Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 14727723 - 14727884
Alignment:
Q  25 aacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctgatgacaata 124  Q
    |||| ||||||  |||| || ||||||||||||||| |||||||| |||||  | ||||||||||||| ||| |||||||||||||||||| ||||||||    
T  14727723 aacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtggagtttatcagattagtgctggtgacaata 14727822  T
Q  125 atttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgtc 186  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||    
T  14727823 atttgaacatcacttcctccaattctactatttccaccccaaaaaatgttggaagatctgtc 14727884  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 28693285 - 28693130
Alignment:
Q  25 aacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagatt-agtgctgatgacaat 123  Q
    |||| ||||||| |||| |||||||||||||||||||||||||  |||||| ||||||  |||||||| ||| ||||||||||| ||||||| ||||| |    
T  28693285 aacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcagatttagtgctggtgacagt 28693186  T
Q  124 aatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaa 179  Q
    |||||||||||||||||||| || |||||||||||||||| |  ||||||||||||    
T  28693185 aatttgaacatcacttcctcaaactctactatttctaccccagcaaatgttgggaa 28693130  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 29552811 - 29552918
Alignment:
Q  82 agtccccctggcggactttatcagattagtgctgatgacaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaat 181  Q
    ||||||||||| ||| |||||||| ||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||| ||| ||||    
T  29552811 agtccccctggtggagtttatcaggttaatgctagtgacaaaaatttgaacatcacttcctccaattctactatttctaccctaggaaatgctggaaaat 29552910  T
Q  182 ctgtcatg 189  Q
    | ||||||    
T  29552911 cggtcatg 29552918  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 30648848 - 30649008
Alignment:
Q  22 cgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctgatgaca 121  Q
    ||||||||||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||| ||| |||||||| ||||||||| |||||    
T  30648848 cgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgaca 30648947  T
Q  122 ataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatc 182  Q
     |||   |||||||||||||||||||| ||| |||||| ||| |  ||||| |||||||||    
T  30648948 ctaacacgaacatcacttcctccaattttaccatttctgccccaggaaatgctgggaaatc 30649008  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 26089190 - 26089356
Alignment:
Q  22 cgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgct---gatg 118  Q
    ||||||| ||||||  |||||||||||||| |||||||| | || ||  |||||    ||||||||||| | ||| |||||||| ||||||||   ||||    
T  26089190 cgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttatcaggttagtgctagtgatg 26089289  T
Q  119 acaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgt 185  Q
     ||||  | |||||||||||||||||||||||||||||||||| | |  ||||| ||||||||||||    
T  26089290 gcaatggtgtgaacatcacttcctccaattctactatttctactccaggaaatgctgggaaatctgt 26089356  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 26090197 - 26090318
Alignment:
Q  30 ttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctgatgacaataatttg 129  Q
    ||||||| |||| ||| ||||||||||| |||||||||| ||     || ||| ||||| ||| ||| ||||||||||||| | || ||||||||||| |    
T  26090197 ttggttaatagtcgcgtctcttattgcatctaccatgtatgag----ctttgactccccatggtggagtttatcagattagggttggtgacaataattgg 26090292  T
Q  130 aacatcacttcctccaattctactat 155  Q
    ||||||||||||| ||||||||||||    
T  26090293 aacatcacttccttcaattctactat 26090318  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 27714308 - 27714465
Alignment:
Q  25 aacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctgatgacaata 124  Q
    ||||||||| |  |||||||||||||| |||||||  |||||||  ||||| |  ||| ||||  ||| ||| |||||||| ||| ||||  ||||||||    
T  27714308 aacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattgactcccgttggtggagtttatcaggttaatgctagtgacaata 27714407  T
Q  125 atttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatc 182  Q
    || | ||||| |||||||| |||||||| || |||||||  | ||||| |||||||||    
T  27714408 atgtcaacattacttcctctaattctacaatgtctacccctagaaatgctgggaaatc 27714465  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 24509349 - 24509424
Alignment:
Q  84 tccccctggcggactttatcagattagtgctgatgacaataatttgaacatcacttcctccaattctactatttct 159  Q
    ||||||||||||| ||||||| | || ||||    |||| |||||||||| |||||||||| ||||||||||||||    
T  24509349 tccccctggcggattttatcaaactaatgctaccaacaaaaatttgaacaccacttcctccgattctactatttct 24509424  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 26086557 - 26086371
Alignment:
Q  3 tgacataacaggggaggatcgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttat 102  Q
    |||||| |||| |||| | || |||| ||||||| |||| ||  |||||||||| ||||||||||| |||||| |||||| ||||||||| ||| |||||    
T  26086557 tgacatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttat 26086458  T
Q  103 cagattagtgctgatgacaataatttgaacatcacttcctccaattctactatttcta---ccctaaaaaatgttgggaaatctgtc 186  Q
    | || |||||| | |||||||| |||||||||||||||||||||||||||||||||||   ||| |  |||||||||||||||||||    
T  26086457 ccgagtagtgccggtgacaatagtttgaacatcacttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtc 26086371  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 6611007 - 6610834
Alignment:
Q  22 cgtaacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctg---atg 118  Q
    ||||||||||||||  || ||||||||||  |||||||| |||| ||  |||||    ||||||| ||||| ||| |||||||| |||||| ||   |||    
T  6611007 cgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagtgttggtgatg 6610908  T
Q  119 acaataatttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatctgtcatgcct 192  Q
    |||||  | |||||||||||||||| ||||||||||||||||| | | |||||| ||||||||| |||||||||    
T  6610907 acaatggtgtgaacatcacttcctcaaattctactatttctactccagaaaatgctgggaaatcggtcatgcct 6610834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 17292754 - 17292597
Alignment:
Q  25 aacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctgatgacaata 124  Q
    |||||||||||  || ||||||||||| |||||||  |||  ||  ||||||| || | ||||  ||| ||  |||||||| ||||| ||  ||||||||    
T  17292754 aacacttggttgataattgcgactcttgttgcaacagccacctatcaatcaacgctaactcccgttggtggtgtttatcaggttagtactagtgacaata 17292655  T
Q  125 atttgaacatcacttcctccaattctactatttctaccctaaaaaatgttgggaaatc 182  Q
    || |||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  17292654 atgtgaacaacacttccttcaattctacaatttctaccccaaaaaatgttgggaaatc 17292597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 4819876 - 4820013
Alignment:
Q  25 aacacttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggcggactttatcagattagtgctgatgacaata 124  Q
    |||||||||||  |||||||||||||| |||||||| |||  |   ||||| |  ||  ||| || || ||| |||||||| ||| ||||  ||||| ||    
T  4819876 aacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcaggttaatgctagtgacagta 4819975  T
Q  125 atttgaacatcacttcctccaattctactatttctacc 162  Q
     |||||||||||| ||| ||||||||||||||||||||    
T  4819976 gtttgaacatcacgtccaccaattctactatttctacc 4820013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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