View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7078_low_8 (Length: 280)

Name: NF7078_low_8
Description: NF7078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7078_low_8
NF7078_low_8
[»] chr6 (2 HSPs)
chr6 (70-126)||(10519582-10519638)
chr6 (73-119)||(2582653-2582699)
[»] chr7 (3 HSPs)
chr7 (73-126)||(15074404-15074457)
chr7 (192-224)||(22822710-22822742)
chr7 (192-224)||(22827013-22827045)
[»] chr5 (3 HSPs)
chr5 (73-126)||(38495346-38495399)
chr5 (73-126)||(10513160-10513213)
chr5 (73-126)||(17341062-17341115)
[»] chr1 (6 HSPs)
chr1 (73-126)||(52113374-52113427)
chr1 (192-224)||(28512981-28513013)
chr1 (192-224)||(38985083-38985115)
chr1 (193-224)||(28519446-28519477)
chr1 (193-224)||(38991270-38991301)
chr1 (73-126)||(7102445-7102498)
[»] chr4 (6 HSPs)
chr4 (76-126)||(26348876-26348926)
chr4 (192-224)||(917243-917275)
chr4 (192-224)||(42404814-42404846)
chr4 (193-224)||(12435303-12435334)
chr4 (193-224)||(42411278-42411309)
chr4 (91-126)||(44229888-44229923)
[»] chr3 (3 HSPs)
chr3 (73-126)||(20809270-20809323)
chr3 (83-126)||(38093051-38093094)
chr3 (76-126)||(47692494-47692544)
[»] chr8 (5 HSPs)
chr8 (192-224)||(21241343-21241375)
chr8 (192-224)||(37204408-37204440)
chr8 (193-224)||(21247847-21247878)
chr8 (193-224)||(27683363-27683394)
chr8 (193-224)||(37209885-37209916)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 10519638 - 10519582
Alignment:
Q  70 aactaccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10519638 aactaccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 10519582  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 2582699 - 2582653
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccat 119  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||||    
T  2582699 taccaaattacccatctagttcacaccaaaattattgttttgcccat 2582653  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 15074404 - 15074457
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15074404 taccaaattacccctctagttcacaccaaaattactgttttgcccatggtgttg 15074457  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 22822742 - 22822710
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  22822742 gtgttatgaatataagtaaatagagacagtaat 22822710  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 22827045 - 22827013
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  22827045 gtgttatgaatataagtaaatagagacagtaat 22827013  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 38495399 - 38495346
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38495399 taccaaattacccctctagttcacaccaaaattactgttttgcccatggtgttg 38495346  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 10513160 - 10513213
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  10513160 taccaaactacccctctagttcacaccaaaattattgttttgcccatggtgttg 10513213  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 17341115 - 17341062
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    ||||||| |||||||| ||||||||||||||| | | |||||||||||||||||    
T  17341115 taccaaactacccctcgagttcacaccaaaattattattttgcccatggtgttg 17341062  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 52113427 - 52113374
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  52113427 taccaaattacccctctagttcacactaaaattactgttttacccatggtgttg 52113374  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 28513013 - 28512981
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  28513013 gtgttatgaatataagtaaatagagacagtaat 28512981  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 38985115 - 38985083
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  38985115 gtgttatgaatataagtaaatagagacagtaat 38985083  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 28519477 - 28519446
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  28519477 tgttatgaatataagtaaatagagacagtaat 28519446  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 38991301 - 38991270
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  38991301 tgttatgaatataagtaaatagagacagtaat 38991270  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 7102498 - 7102445
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||| |||| || ||||||||||||| ||||||||  |||||||||||    
T  7102498 taccaaattatccctgtatttcacaccaaaattactgttttatccatggtgttg 7102445  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 26348876 - 26348926
Alignment:
Q  76 caaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  26348876 caaattacccttctagttcacaccaaaattactgttttacccatggtgttg 26348926  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 917243 - 917275
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  917243 gtgttatgaatataagtaaatagagacagtaat 917275  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 42404846 - 42404814
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  42404846 gtgttatgaatataagtaaatagagacagtaat 42404814  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 12435303 - 12435334
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  12435303 tgttatgaatataagtaaatagagacagtaat 12435334  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 42411309 - 42411278
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  42411309 tgttatgaatataagtaaatagagacagtaat 42411278  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 44229888 - 44229923
Alignment:
Q  91 gttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||||||| |||||||||||||||||||||    
T  44229888 gttcacaccaaaattactgttttgcccatggtgttg 44229923  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 20809270 - 20809323
Alignment:
Q  73 taccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    ||||||| || ||||||||||||||||||||| | ||||||| |||||||||||    
T  20809270 taccaaactatccctctagttcacaccaaaattattgttttgtccatggtgttg 20809323  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 38093094 - 38093051
Alignment:
Q  83 cccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    |||||||||||||||||||||| ||| ||||| |||||||||||    
T  38093094 cccctctagttcacaccaaaattactattttgtccatggtgttg 38093051  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 47692544 - 47692494
Alignment:
Q  76 caaattacccctctagttcacaccaaaatgactgttttgcccatggtgttg 126  Q
    ||||||| |||| || ||||||||||||| |||||||| ||||||||||||    
T  47692544 caaattatccctgtatttcacaccaaaattactgttttacccatggtgttg 47692494  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 21241375 - 21241343
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  21241375 gtgttatgaatataagtaaatagagacagtaat 21241343  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 37204440 - 37204408
Alignment:
Q  192 gtgttatgaatataagtaaatagagacagtaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  37204440 gtgttatgaatataagtaaatagagacagtaat 37204408  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 21247878 - 21247847
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  21247878 tgttatgaatataagtaaatagagacagtaat 21247847  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 27683363 - 27683394
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  27683363 tgttatgaatataagtaaatagagacagtaat 27683394  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 37209916 - 37209885
Alignment:
Q  193 tgttatgaatataagtaaatagagacagtaat 224  Q
    ||||||||||||||||||||||||||||||||    
T  37209916 tgttatgaatataagtaaatagagacagtaat 37209885  T

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