View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7079_high_1 (Length: 268)

Name: NF7079_high_1
Description: NF7079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7079_high_1
NF7079_high_1
[»] chr2 (8 HSPs)
chr2 (1-264)||(2803204-2803467)
chr2 (180-254)||(33561499-33561573)
chr2 (180-252)||(30312825-30312897)
chr2 (155-257)||(13766795-13766899)
chr2 (180-253)||(29873586-29873659)
chr2 (211-252)||(36005930-36005971)
chr2 (180-264)||(2336660-2336744)
chr2 (211-255)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (150-264)||(10351209-10351325)
chr5 (180-252)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (180-257)||(8481962-8482039)
chr6 (180-247)||(5034876-5034943)
chr6 (180-221)||(27226675-27226716)
chr6 (180-252)||(6071168-6071240)
[»] chr4 (4 HSPs)
chr4 (155-233)||(42480533-42480611)
chr4 (211-257)||(22028412-22028458)
chr4 (180-252)||(34544142-34544215)
chr4 (188-264)||(23630348-23630424)
[»] chr1 (3 HSPs)
chr1 (180-252)||(1188638-1188710)
chr1 (211-257)||(32594761-32594807)
chr1 (180-253)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (180-257)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (215-264)||(7192786-7192835)
chr7 (211-252)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (180-221)||(260805-260846)
chr3 (155-232)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 2803467 - 2803204
Alignment:
Q  1 aaagcaaaggaccacccccactcggttacttacaatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803467 aaagcaaaggaccacccccactcggttacttactatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgttt 2803368  T
Q  101 cttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2803367 cttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagtctcacattgtttaaagaagtggaggttgaacattcta 2803268  T
Q  201 taaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 264  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  2803267 taaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaactca 2803204  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 254  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 13766795 - 13766899
Alignment:
Q  155 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| |||||||  ||||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  253 atgtc 257  Q
     ||||    
T  13766895 gtgtc 13766899  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 29873659 - 29873586
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 253  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| |||||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  211 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 2336660 - 2336744
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 264  Q
    |||||||||||||||| | |||||  |||| |||||||||| |||||| |||||  |||||||| ||  |||| |||||| ||||    
T  2336660 aagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactca 2336744  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  211 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 255  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 10351325 - 10351209
Alignment:
Q  150 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 247  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  248 gtgtgatgtccatctca 264  Q
    |||||||||| ||||||    
T  10351225 gtgtgatgtctatctca 10351209  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 257  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa 247  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| |||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa 5034876  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaac 221  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  155 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 233  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  211 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 257  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 252  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 23630348 - 23630424
Alignment:
Q  188 gttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 264  Q
    |||||||| | |||||  |||| ||| ||||||||||| |||||||   |||||||||||||||||| ||| |||||    
T  23630348 gttgaacactttataagtgagacgactcataaactcaacgtcttaagactttgggtaaaagtgtgatttccctctca 23630424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  211 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 257  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 253  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 257  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 7192786 - 7192835
Alignment:
Q  215 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 264  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||| ||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca 7192835  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  211 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 252  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  180 aagtggaggttgaacattctataaaagagatgacccataaac 221  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  155 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 232  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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