View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7079_low_2 (Length: 251)
Name: NF7079_low_2
Description: NF7079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7079_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2803465 - 2803643
Alignment:
| Q |
1 |
tttgaatgtgtaatcagagcatggcagtgacagttgtggtatgtattcatcctctttaccgagaaaaccgctgctaaacattgaggcatgatgttgaatc |
100 |
Q |
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| T |
2803465 |
tttgaatgtgtaatcagagcatggcagtgacagttgtggtatgtattcatcctctttaccgagaaaaccgctgctaaacattgaggcatgatgttgaatc |
2803564 |
T |
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| Q |
101 |
catcacaaagtacaatcaagtagcatctcgaaaaccagcttgtcctattgaacctctttaacattaacataaacattaa |
179 |
Q |
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| T |
2803565 |
catcacaaagtacaatcaagtagcatctcgaaaaccagcttgtcctattgaacctctttaacattaacattaacattaa |
2803643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 2803724 - 2803764
Alignment:
| Q |
198 |
taactatgcattaggaattcatggctctggctttttgatgt |
238 |
Q |
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| T |
2803724 |
taactatgcattaggaattcatggctctggctttttgatgt |
2803764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 2803634 - 2803673
Alignment:
| Q |
158 |
ttaacattaacataaacattaatattttgatcaaattaac |
197 |
Q |
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| T |
2803634 |
ttaacattaacataaacattaatattttgataaaattaac |
2803673 |
T |
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