View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7079_low_3 (Length: 216)
Name: NF7079_low_3
Description: NF7079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7079_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 16865069 - 16865263
Alignment:
| Q |
11 |
gaacctgtgtcttgaaactctgacagtccattatacatgaagctccatggataatcttggtcaaaacaatgatccataatattaactattgtgcattcat |
110 |
Q |
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| T |
16865069 |
gaacctgtgtcttgaaactctgacagtccattatacatgaagctccatggataatcttggtcaaaacaatgatccataatattaactattgcgcattcat |
16865168 |
T |
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| Q |
111 |
gactagttggaggaacatgttgttgttgaaattgttgctgcaaaggttctatttgtagttgattttcttcttgaggtggggtagttgttgtttgt |
205 |
Q |
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| T |
16865169 |
gactagttggaggaacatgttgttggtgaaattgttgcggcaaaggttctatttgtagttgattttcttcttgaggtggggtagttgttgtttgt |
16865263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 16855911 - 16856030
Alignment:
| Q |
16 |
tgtgtcttgaaactctgacagtccattatacatgaagctccatggataatcttggtcaaaacaatgatccataatattaactattgtgcattcatgacta |
115 |
Q |
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| T |
16855911 |
tgtgtcttgaaactctaacaatccattacacacgaagctccatggtaggtctaggtcaaaataatgatccataacattaactaatgtgtgttcttgatca |
16856010 |
T |
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| Q |
116 |
gttggaggaacatgttgttg |
135 |
Q |
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| T |
16856011 |
gttggaggaacatgttgttg |
16856030 |
T |
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