View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_high_16 (Length: 275)
Name: NF7080_high_16
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 2109874 - 2110110
Alignment:
| Q |
17 |
gtgccaccggccacatcaagatgcttcattccaggaaaaggattcaacatggaaactagcctgagaaattgagcaaaaactacagattaatgtcaaatcc |
116 |
Q |
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| T |
2109874 |
gtgccaccggccacatcaagatgcttcattccaggaaaaggattcaacatggaaactagcctgagaaattgagcaaaaactacagattaatgtcaaatcc |
2109973 |
T |
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| Q |
117 |
tgtaacgaactaacacagacacaacattgatgcgtaaacataggtaataatttnnnnnnnnnnnnnnnnnnnnnggaagaaactgtatgcaacatgtggc |
216 |
Q |
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| T |
2109974 |
tgtaaagaactaacacagacacaacattgatgcgtaaacataggtaataattt-----taaaaaataaaataaaggaagaaactgtatgcaacatgtggc |
2110068 |
T |
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| Q |
217 |
aatgtcatgttggtatcctacataggtcaaatctattcaatt |
258 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
2110069 |
aatgtcatgttggtattgtacataggtcaaatctattcaatt |
2110110 |
T |
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