View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_high_5 (Length: 426)
Name: NF7080_high_5
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Complemental strand, 2489167 - 2488762
Alignment:
| Q |
5 |
ggtagataatactcacaactaaatacaataacgacaagcactgcaaacctcagatgttactgcttgagcttctaacttcaatgaatctctgtcactgaat |
104 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2489167 |
ggtagatattattcacaactaaatacaataacgacaagcactgcaaacctcagatgttactgcttgagcttctaacttcaatgaatctctgtcaccgaat |
2489068 |
T |
|
| Q |
105 |
tttcccgcctggaatattcccagagcatgggacaaactgtttcgaaatacaattaagtaagtatataaaagttagattgttcatgcagcaaaatttgccg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489067 |
tttcccgcctggaatattcccagagcatgggacaaactgtttcgaaatacaattaagtaagtatataaaagttagattgttcatgcagcaaaatttgccg |
2488968 |
T |
|
| Q |
205 |
gtctaacctgttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttct |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2488967 |
gtctaacctgttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattatatgatacgaaattgctgacacgataatctcttct |
2488868 |
T |
|
| Q |
305 |
atatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488867 |
atatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgt |
2488768 |
T |
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| Q |
405 |
tatctt |
410 |
Q |
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|||||| |
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| T |
2488767 |
tatctt |
2488762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 227 - 388
Target Start/End: Original strand, 41592228 - 41592389
Alignment:
| Q |
227 |
atcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttactgagaaccattg |
326 |
Q |
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| T |
41592228 |
atcagcttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattg |
41592327 |
T |
|
| Q |
327 |
tgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttcc |
388 |
Q |
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| T |
41592328 |
tgtcttccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttcc |
41592389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 8842865 - 8842970
Alignment:
| Q |
300 |
cttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggtt |
399 |
Q |
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||||||| ||||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||||||| | ||||||||||||||||| |
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| T |
8842865 |
cttctatgtagttacaaagaaccattgtgtccgctacacagatggaatcaatgtcatgaatatcaagataattggctgcaaggacttccatgatatggtt |
8842964 |
T |
|
| Q |
400 |
cttgtt |
405 |
Q |
| |
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|||||| |
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|
| T |
8842965 |
cttgtt |
8842970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 32248412 - 32248453
Alignment:
| Q |
332 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
373 |
Q |
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| T |
32248412 |
gctacacagatggaatccaggtcatgacaatcgagatcattg |
32248453 |
T |
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