View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_high_8 (Length: 375)
Name: NF7080_high_8
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 43255060 - 43255403
Alignment:
| Q |
16 |
ctctgaaacagtgttggaagtactgaatgttgctccaatatctcctcctaaattaacttcactttcatgacctgagaaacacatgaatcatttaataaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255060 |
ctctgaaacagtgttggaagtactgaatgttgctccaatatctcctcctaaattaacttcactttcatgacctgagaaacacatgaatcatttaataaaa |
43255159 |
T |
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| Q |
116 |
aatcacatggttatttgaatttatcatgaaattgaaaggaaacaatacccgaagaacgacccgtgggactgactcttgtgattcggaggcgcgagcagat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255160 |
aatcacatggttatttgaatttatcatgaaattgaaaggaaacaatacccaaagaacgacccgtgggactgactcttgtgattcggaggcgcgagcagat |
43255259 |
T |
|
| Q |
216 |
aaatccagcaaaagaaagagccaaagccaaaccaaagttcattaaaattggcttcatacccttctcttccttct---tcatcatcaaaattaatctaatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
43255260 |
aaatccagcaaaagaaagagccaaagccaaaccaaagttcactaaaattggcttcatacccttctcttccttcttcatcatcatcaaaattaatctaact |
43255359 |
T |
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| Q |
313 |
tttcacaagataactaaaacagttcttcttcatcactatcatcc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255360 |
tttcacaagataactaaaacagttcttcttcatcactatcatcc |
43255403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 22621502 - 22621535
Alignment:
| Q |
57 |
ctcctcctaaattaacttcactttcatgacctga |
90 |
Q |
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| T |
22621502 |
ctcctcctaaattaacttcactttcatgacctga |
22621535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 4487698 - 4487731
Alignment:
| Q |
57 |
ctcctcctaaattaacttcactttcatgacctga |
90 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4487698 |
ctcctcctaaattaacttcactttcatgacctga |
4487731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 22067198 - 22067231
Alignment:
| Q |
57 |
ctcctcctaaattaacttcactttcatgacctga |
90 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22067198 |
ctcctcctaaattaacttcactttcatgacctga |
22067231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 19023299 - 19023332
Alignment:
| Q |
57 |
ctcctcctaaattaacttcactttcatgacctga |
90 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
19023299 |
ctcctcctaaattaacttcactttcataacctga |
19023332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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