View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7080_low_1 (Length: 704)

Name: NF7080_low_1
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7080_low_1
NF7080_low_1
[»] chr4 (3 HSPs)
chr4 (19-696)||(17225231-17225910)
chr4 (580-696)||(5373873-5373989)
chr4 (603-664)||(40225492-40225554)
[»] chr8 (2 HSPs)
chr8 (19-335)||(39947702-39948041)
chr8 (427-513)||(39948144-39948228)
[»] chr5 (2 HSPs)
chr5 (580-696)||(20319519-20319635)
chr5 (603-682)||(10548194-10548274)
[»] chr1 (7 HSPs)
chr1 (580-668)||(41956048-41956136)
chr1 (606-696)||(11398257-11398349)
chr1 (603-664)||(52935172-52935234)
chr1 (603-664)||(52942807-52942869)
chr1 (603-664)||(52946215-52946277)
chr1 (603-668)||(18136436-18136503)
chr1 (611-671)||(31230344-31230405)
[»] chr7 (2 HSPs)
chr7 (603-696)||(47762075-47762169)
chr7 (628-692)||(20290667-20290731)
[»] chr3 (2 HSPs)
chr3 (603-701)||(7051112-7051210)
chr3 (608-671)||(30174411-30174475)
[»] chr2 (1 HSPs)
chr2 (603-696)||(42735282-42735378)
[»] scaffold0590 (1 HSPs)
scaffold0590 (603-682)||(5017-5099)


Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 19 - 696
Target Start/End: Complemental strand, 17225910 - 17225231
Alignment:
Q  19 attggactagtatgtcacttaaacagaagtaaaaattatattacctgataggagatccaggtgtatagagtggattcttgacaacatattcaacatacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225910 attggactagtatgtcacttaaacagaagtaaaaattatattacctgataggagatccaggtgtatagagtggattcttgacaacatattcaacatacaa 17225811  T
Q  119 attgtagatgtactttaaggagtcccgaagatcaccagttctaggatgagttaccaagataatctgcatggagtcatggcagtgttacaatacaattagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225810 attgtagatgtactttaaggagtcccgaagatcaccagttctaggatgagttaccaagataatctgcatggagtcatggcagtgttacaatacaattagt 17225711  T
Q  219 agtataaggaacaatatatgaatattgcttttctgaaagcccaatatgacaatttt--tgactttttgttgtaacatacctgttcaattttaaatagttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  17225710 agtataaggaacaatatatgaatattgcttttctgaaagcctaatatgacaatttttgtgactttttgttgtaacatacctgttcaattttaaatagttc 17225611  T
Q  317 ccagtttaaatagtaatgccttttttacttcacataacttcttaaataaaactcagaaaatttcagtcatatctacctcactcaattatcaactaccatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225610 ccagtttaaatagtaatgccttttttacttcacataacttcttaaataaaactcagaaaatttcagtcatatctacctcactcaattatcaactaccatt 17225511  T
Q  417 gtgctaacaaaccaatgccagacaaagagatcataacatcataaaagcattaaagtaaatcagaagctcacaactacatacggaagaactgagagaacnn 516  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  17225510 gtgctgacaaaccaatgccagacaaagagatcataacatcataaaagcattaaagtaaatcagaagctcacaactacatacggaagaactgagagaacaa 17225411  T
Q  517 nnnnnnnnngtattatgtcctcttcaaaacnnnnnnntattattcagtcattagactactttcctgtaatgagtcaaagagcaatcaggggcaatatggg 616  Q
             |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225410 aaaaaaaaagtattatgtcctcttcaaaacaaaaaaatattattcagtcattagactactttcctgtaatgagtcaaagagcaatcaggggcaatatggg 17225311  T
Q  617 aaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225310 aaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 17225231  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 580 - 696
Target Start/End: Complemental strand, 5373989 - 5373873
Alignment:
Q  580 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtg 679  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || ||||    
T  5373989 ctgtaataagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataagcatgaaaaatgtgtg 5373890  T
Q  680 atgaaactcttcttctc 696  Q
    |||||||||||||||||    
T  5373889 atgaaactcttcttctc 5373873  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 40225554 - 40225492
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 664  Q
    ||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||||||| ||||    
T  40225554 aggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

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Target: chr8 (Bit Score: 159; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 39947702 - 39948041
Alignment:
Q  19 attggactagtatgtcacttaaacagaagtaaaaattatattacctgataggagatccaggtgtatagagtggattcttgacaacatattcaacatacaa 118  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  39947702 attggactagtatgtcatttaaacagaagtgaaaattatgttacctgataggagatccgggtgtatagagtggattcttaacaacatattcaacatacaa 39947801  T
Q  119 attgtagatgtactttaaggagtcccgaagatcaccagttctaggatgagttaccaagataatctgcat--------ggagtcatggcagtgttacaata 210  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        | | |||||||||||||||||||    
T  39947802 attgtagatatactttaaggattcccgaagatcaccagttctaggatgagttaccaagataatctgcattaagcatggaaatcatggcagtgttacaata 39947901  T
Q  211 caattagtagtataaggaacaatatatgaatattgc------------ttttctgaaagcccaatatgacaa--tttttgactttttgttgtaacatacc 296  Q
    || ||| || || | |||||||||||||||||||||            || ||||||||| |||||||||||  ||| |||||||||| ||||| |||||    
T  39947902 cagttactattacagggaacaatatatgaatattgcttccttgattgtttatctgaaagcacaatatgacaacttttgtgactttttgctgtaatatacc 39948001  T
Q  297 tgttcaatttt-aaatagttcccagtttaaatagtaatgc 335  Q
    ||||| ||||| ||||||||| |||||| |||||| ||||    
T  39948002 tgttcgattttaaaatagttcacagttttaatagttatgc 39948041  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 39948144 - 39948228
Alignment:
Q  427 accaatgccagacaaagagatcataacatcataaaagcattaaagtaaatcagaagctcacaactacatacggaagaactgagagaa 513  Q
    |||||||||||||   |||||||||  |||||| || ||| || ||||||||||||||||||||||||||| ||| || ||||||||    
T  39948144 accaatgccagacc--gagatcatagaatcatacaatcatgaatgtaaatcagaagctcacaactacataccgaataattgagagaa 39948228  T

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Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 580 - 696
Target Start/End: Complemental strand, 20319635 - 20319519
Alignment:
Q  580 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtg 679  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| || || ||||    
T  20319635 ctgtaataagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagtccaggaaataagcatgaaatatgtgtg 20319536  T
Q  680 atgaaactcttcttctc 696  Q
    |||||||||||||||||    
T  20319535 atgaaactcttcttctc 20319519  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 682
Target Start/End: Original strand, 10548194 - 10548274
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatg 682  Q
    ||||||| ||||| |||||| |||| ||||| ||||||||| |||||||||||||||| |||| |||||| || |||||||    
T  10548194 aggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgtgatg 10548274  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 580 - 668
Target Start/End: Original strand, 41956048 - 41956136
Alignment:
Q  580 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatg 668  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  41956048 ctgtaatgagtcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatg 41956136  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 606 - 696
Target Start/End: Complemental strand, 11398349 - 11398257
Alignment:
Q  606 ggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatgg-aagatatgtgatgaaactcttcttctc 696  Q
    |||| ||||| |||||| |||| ||||||||||||||| |||||||||||||||| |||| |||| || ||||||||||||||||||||||||    
T  11398349 ggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaaaaatatgtgatgaaactcttcttctc 11398257  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 52935172 - 52935234
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 664  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  52935172 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 52942807 - 52942869
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 664  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  52942807 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 52946215 - 52946277
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 664  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  52946215 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 668
Target Start/End: Original strand, 18136436 - 18136503
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagag-aaaagccaaggaagtaagcatg 668  Q
    ||||||| |||||||||||| |||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  18136436 aggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatg 18136503  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 671
Target Start/End: Complemental strand, 31230405 - 31230344
Alignment:
Q  611 tatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaa 671  Q
    |||||||||||| |||| ||||||||||||||| ||||||| |||| | | |||||||||||    
T  31230405 tatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaa 31230344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 603 - 696
Target Start/End: Original strand, 47762075 - 47762169
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 696  Q
    ||||||| ||||| |||||| |||| ||||||||||||||| |||||||||||||||| |||| || ||| ||||||||||||||||||||||||    
T  47762075 aggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggattgaaaatatgtgatgaaactcttcttctc 47762169  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 692
Target Start/End: Complemental strand, 20290731 - 20290667
Alignment:
Q  628 ggacccttataaataagagaaaagccaaggaagtaag-catggaagatatgtgatgaaactcttct 692  Q
    ||||||||||||||||||| ||||||||| || |||| ||||||| ||||||||||||| ||||||    
T  20290731 ggacccttataaataagag-aaagccaagcaaataagacatggaaaatatgtgatgaaattcttct 20290667  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 7051112 - 7051210
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctcactcg 701  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||||||  |||||||| |||| |||||| |||||||||||||||||||||||| ||||    
T  7051112 aggggtaatatgggaaaaaggaatatggacccttataaataagagaaat-ccaaggaaataaggatggaaaatatgtgatgaaactcttcttctctctcg 7051210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 671
Target Start/End: Complemental strand, 30174475 - 30174411
Alignment:
Q  608 caatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaa 671  Q
    |||||||||||  || |||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  30174475 caatatgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatggaa 30174411  T

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Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 603 - 696
Target Start/End: Original strand, 42735282 - 42735378
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggaccct--tataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 696  Q
    ||||||| |||||||||||| |||| |||||||  |||||||| |||||||| ||||||| |||||||| || |||||||||||||||||| |||||    
T  42735282 aggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatgaaaaatatgtgatgaaactcttattctc 42735378  T

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Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 682
Target Start/End: Complemental strand, 5099 - 5017
Alignment:
Q  603 aggggcaatatgggaaatagaaata-ggacccttata--aataagagaaaagccaaggaagtaagcatggaagatatgtgatg 682  Q
    ||||||| |||||||||||| |||| |||||||||||  |||| |||||||||||||||| |||||||| || || |||||||    
T  5099 aggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatgtgtgatg 5017  T

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