View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_10 (Length: 365)
Name: NF7080_low_10
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 1244147 - 1243811
Alignment:
| Q |
11 |
aaacttgaaatttgtaagacatgaacttttatggtattgaattttcaataaatttgttatcatgaacttagtgaagttttttcacacttttcctacgtac |
110 |
Q |
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| T |
1244147 |
aaacctgaaatttgtaagacatgaacttttatggtattgaattttcaataaatttgttatcatgaacttagtgaagttttttcacacttttcctacgtac |
1244048 |
T |
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| Q |
111 |
taatgtgtttttggtcacagtccacattgaaacatgtattagttattaagttaatcttactttctcattaataacgtcgactagagattcagaagctggt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1244047 |
taatgtgtttttggtcacagtccacattgaaacatgtattagttattaagttaatcttactttctcattaataacgt---ccagagattcagaagctggt |
1243951 |
T |
|
| Q |
211 |
atgcgagagagatttgtataagctattgaatttaaaactaacgggcattattacaattcttcatagtacttataaataagagaaaaatatagaaaagtga |
310 |
Q |
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| T |
1243950 |
atgcgagagagatctgtataagctattgaatttaaaactaacgggcattattacaattcttcatagtacttataaataagagaaaaatatagaaaagtga |
1243851 |
T |
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| Q |
311 |
aatgaaaatacaccttagattttgagagaattgttacatc |
350 |
Q |
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| T |
1243850 |
aatgaaaatacaccttagattttgagagaattgttacatc |
1243811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 1248454 - 1248396
Alignment:
| Q |
11 |
aaacttgaaatttgtaagacatgaacttttatggtattgaattttcaataaatttgtta |
69 |
Q |
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| T |
1248454 |
aaacctgaaatttgtaagccatcaacttttatggtattgaattttcattaaatatgtta |
1248396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 44897603 - 44897715
Alignment:
| Q |
39 |
ttatggtattgaattttcaataaatttgttatcatgaacttagtgaagttttttcacacttttcctacgtactaatgtgtttttggtcacagtccacatt |
138 |
Q |
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||||||||| ||||||||| ||||| ||||||| ||||||| |||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
44897603 |
ttatggtatggaattttcattaaatctgttatcgtgaactttgtgaagctttttgacactttccctacgtactaatgtgtttttgacttcagtccacatt |
44897702 |
T |
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| Q |
139 |
gaaacatgtatta |
151 |
Q |
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| T |
44897703 |
gaaacttgtatta |
44897715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 320
Target Start/End: Complemental strand, 34878948 - 34878919
Alignment:
| Q |
291 |
agaaaaatatagaaaagtgaaatgaaaata |
320 |
Q |
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| T |
34878948 |
agaaaaatatagaaaagtgaaatgaaaata |
34878919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 43182350 - 43182289
Alignment:
| Q |
259 |
tattacaattcttcatagtacttataaataagagaaaaatatagaaaagtgaaatgaaaata |
320 |
Q |
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||||||||||||| |||| ||| |||| | |||||||| ||||||||||||||||| ||||| |
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| T |
43182350 |
tattacaattcttgatagaactcataattgagagaaaagtatagaaaagtgaaatggaaata |
43182289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 260226 - 260175
Alignment:
| Q |
263 |
acaattcttcatagtacttataaataagagaaaaatatagaaaagtgaaatg |
314 |
Q |
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||||||||| |||| ||| |||| | |||||||||||||||||||||||||| |
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| T |
260226 |
acaattcttgatagaactcataattgagagaaaaatatagaaaagtgaaatg |
260175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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