View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_14 (Length: 289)
Name: NF7080_low_14
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 41113853 - 41113590
Alignment:
| Q |
9 |
cattattcttattgtgttgtattgctgcaggcccagctggagaagattgtgtctactgatggcctatctatcagaggatgtgtttgaaattgcttcgaag |
108 |
Q |
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| T |
41113853 |
cattatttttattgtgttgtattgctgcaggcccagctggagaagattgtgtctactaatggcctatctatcagaggatgtgtttgaaattgcttcaaag |
41113754 |
T |
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| Q |
109 |
agcttagctgtttaaagtgccaatggctaaaaagaaaaactaccaagttgtgcctttcaacctgttctggattatttttacgtgatccaaatatcttgta |
208 |
Q |
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| T |
41113753 |
agcttagctgcttaaagtgccaatggctaaaaagaaaaactaccaagttgtgcctttcaacctgttctggattatttttacgtgatccaaatatcttgta |
41113654 |
T |
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| Q |
209 |
catgcttaccgcaaatggtagcttttcacatgcatgcatgtctcgtaatggggtggtttccttt |
272 |
Q |
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| T |
41113653 |
catgcttgccacaaatggtagcttttcacatgcatgcatgtctcgtaatggggtggtttccttt |
41113590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 41100020 - 41099866
Alignment:
| Q |
19 |
attgtgttgtattgctgcaggcccagctggagaagattgtgtctactgatggcctatctatcagaggatgtgtttgaaattgcttcgaagagcttagctg |
118 |
Q |
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| T |
41100020 |
attgtgttgtattgttgcaggcccagctggagaagatcatgtctactaatggcctatc----agagaatgtgtttgaaattgcttcgaagagcttagctg |
41099925 |
T |
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| Q |
119 |
tttaaagtgccaatggctaaaaagaaaaactaccaagttgtgcctttcaacctgttctg |
177 |
Q |
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| T |
41099924 |
cttaaagtgccaatggctggtaatcaaaactaccaagctgtgcctttcaaactgttctg |
41099866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 41099827 - 41099757
Alignment:
| Q |
198 |
aatatcttgtacatgcttaccgcaaatggtagcttttcacatgcatgcatgtctcgtaatggggtggtttc |
268 |
Q |
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| T |
41099827 |
aatatcctgtgcgtgcttgccgccactggtagcttttcacacgcatgcatgtctcatattggggtggtttc |
41099757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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