View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_17 (Length: 273)
Name: NF7080_low_17
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 4947209 - 4946973
Alignment:
| Q |
17 |
aggttttacatctgaataatcaaggttataaaattgctttgaagcaattggtgttgaactggagtgctcaaaagaaatgagttgaggtgatgactgggaa |
116 |
Q |
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| T |
4947209 |
aggttttacatctgaataatcaaggttataaaattgctttgaagcaattggtgttgaactggagtgctcaaaagaaatgagttgaggtgatgactgggaa |
4947110 |
T |
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| Q |
117 |
gaaggggttctcgatgtcttgatcttcttggttggccttgtttgatcatcaggatgagtttcaactgggaaacaatttggtgtggtttcgttgtcatcaa |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4947109 |
gaaggggttatcgatgtcttgatcttcttggttggccttgtttgatcatcaggatgagtttcaactgggaaacaatttggtgtcgtttcgttgtcatcaa |
4947010 |
T |
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| Q |
217 |
agtgaaagccaaagttgtcgaatattattggagatgc |
253 |
Q |
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|||||||||||||||||||||||| | |||||||||| |
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| T |
4947009 |
agtgaaagccaaagttgtcgaataatgttggagatgc |
4946973 |
T |
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