View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_19 (Length: 253)
Name: NF7080_low_19
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_19 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 24922873 - 24922720
Alignment:
| Q |
79 |
tgggattgaagatagaagaagaggaaaatggtgacattattggtgagttttcgaggtcgtgttcgtttactacttcacaagaagatgattcatctagcac |
178 |
Q |
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| T |
24922873 |
tgggattgaagatagaagaagaggaaaatggtgacattattggtgagttttcgaggccgtgttcgtttactacttcacaagaagatgattcatctagcac |
24922774 |
T |
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| Q |
179 |
gtcgacggatactaggtcgaatagtatatctcctaatgtgagattgaagcctgt |
232 |
Q |
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| T |
24922773 |
gacgacggatactaggtcgaatagtatatctcctaatgtgagattgaagcctgt |
24922720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 24998963 - 24998810
Alignment:
| Q |
79 |
tgggattgaagatagaagaagaggaaaatggtgacattattggtgagttttcgaggtcgtgttcgtttactacttcacaagaagatgattcatctagcac |
178 |
Q |
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| T |
24998963 |
tgggattgaagatagaagaagaggaaaatggtgacattattggtgagttttcaaggtcgtgttcatttactacttcacaagaagatgattcatctagcac |
24998864 |
T |
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| Q |
179 |
gtcgacggatactaggtcgaatagtatatctcctaatgtgagattgaagcctgt |
232 |
Q |
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| T |
24998863 |
gacgacggatactaggtcgaatagtatatctcctaatgtgagattgaagcctgt |
24998810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 24893849 - 24893807
Alignment:
| Q |
185 |
ggatactaggtcgaatagtatatctcctaatgtgagattgaag |
227 |
Q |
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| T |
24893849 |
ggatactaggtcgaatagtatattttctaatgtgagattgaag |
24893807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 35946 - 35795
Alignment:
| Q |
79 |
tgggattgaagatagaagaa-gaggaaaa-tggtgacattattggt-gagttttcgaggtcgt-gttcgtttacta-cttcacaag-aagatgattcatc |
172 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| ||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
35946 |
tgggattgaagatagaagaaagaggaaaaatggtgacattattggttgagttttcgaggccgtagttcgtttactaacttcacaagtaagatgattcatc |
35847 |
T |
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| Q |
173 |
tagcacgtcgacggatactaggtcgaatagtatatctcc-taatgtgagatt |
223 |
Q |
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| T |
35846 |
tagcacgacgacggatactaggtcgaatagtatatctccttaatgtgagatt |
35795 |
T |
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