View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_20 (Length: 253)
Name: NF7080_low_20
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45913997 - 45913777
Alignment:
| Q |
1 |
agtggatgcagtagtaaaccagcagttgtattcgtgttcggtgattccaactcggatacgggtggactcgtttctggactcggtttccctgtcaatcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45913997 |
agtggatgcagtagtaaaccagcagttgtattcgtgttcggtgattccaactcggatacgggtggactcgtttctggactcggtttccctgtcaatcttc |
45913898 |
T |
|
| Q |
101 |
caaatggtcgtactttctttcacagatccactggtcgtttgtctgatggacgcctcgttatcgactttctctgtaagtatttaatttcttcttctattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
45913897 |
caaatggtcgtactttctttcacagatccactggtcgtttgtctgatggacgcctcgttatcgactttctctgtaagtattttaat--ttcttctattta |
45913800 |
T |
|
| Q |
201 |
ttcacatcaaaatctttcttact |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
45913799 |
ttcacatcaaaatctttcttact |
45913777 |
T |
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