View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_25 (Length: 244)
Name: NF7080_low_25
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 23827978 - 23827767
Alignment:
| Q |
14 |
cctgtgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtccacacgaaaat |
113 |
Q |
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| T |
23827978 |
cctgtgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtccacacgaaaat |
23827879 |
T |
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| Q |
114 |
ttctagttgcattctgaagttctgtcaaagtgaagctcttcaaattggatgattgcaacatctcccctacacgcggaagagtctgtggcaccgataccga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23827878 |
ttctagttgcattctgaagttctgtcaaagtgaagctcttcaaattggatgattgcaacatctcccccacacgcggaagagtctgtggcaccgataccga |
23827779 |
T |
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| Q |
214 |
agcggctgatac |
225 |
Q |
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|||||||||||| |
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| T |
23827778 |
agcggctgatac |
23827767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 23824053 - 23823887
Alignment:
| Q |
14 |
cctgtgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtccacacgaaaat |
113 |
Q |
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|||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
23824053 |
cctgtgccaggtttggcagcagaaagtgagtgttcatcaatccggcccttaaaaactgatccaaaatcgccatctcctaacacaatgtctacacgaaaat |
23823954 |
T |
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| Q |
114 |
ttctagttgcattctgaagttctgtcaaagtgaagctcttcaaattggatgattgcaacatctcccc |
180 |
Q |
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| T |
23823953 |
ttctagttgcagcctgaagttctgtcaaagtaaaactcttcaaattggatgattgcaagatctcccc |
23823887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 23818783 - 23818626
Alignment:
| Q |
14 |
cctgtgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtccacacgaaaat |
113 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
23818783 |
cctgtgccaggtttggcagcagaagatgaacgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtctacacggaaat |
23818684 |
T |
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| Q |
114 |
ttctagttgcattctgaagttctgtcaaagtgaagctcttcaaattggatgattgcaa |
171 |
Q |
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|||| || ||| ||||| ||||||||||| ||| ||||||||||||| |||||||| |
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| T |
23818683 |
ttctcgtagcagcctgaatttctgtcaaagcaaagttcttcaaattggacgattgcaa |
23818626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 23831963 - 23831783
Alignment:
| Q |
18 |
tgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtccacacgaaaatttct |
117 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||||| ||||| || || ||| || |||||||| ||||| |||||||| |
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| T |
23831963 |
tgccgggtttggcagcagaagatgagtgttcatcaatccaacccttgaaaac------------actatgtcccaagacactgtctacacggaaatttct |
23831876 |
T |
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| Q |
118 |
agttgcattctgaagttctgtcaaagtgaagctcttcaaattggatgattgcaacatctcccctacacgcggaagagtctgtggcaccgatac |
210 |
Q |
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|||||| ||||||||| || |||| |||||||||||||||| |||||| || |||||| | |||| | || |||||| ||||||||||| |
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| T |
23831875 |
tgttgcaacctgaagttcagtagaagtaaagctcttcaaattggttgattgtaagatctcctccacaccccgagcagtctgaggcaccgatac |
23831783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 41448147 - 41448067
Alignment:
| Q |
17 |
gtgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacaca |
97 |
Q |
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||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
41448147 |
gtgccaggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatcaaaaatcaccttctcctaacaca |
41448067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 41458520 - 41458436
Alignment:
| Q |
18 |
tgccaggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtc |
102 |
Q |
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|||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||| |
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| T |
41458520 |
tgccaggtttggcagcagaaaatgaattctcatcaatccaacccttaaaaactgctccaaaactaccttctcctaacacattgtc |
41458436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 41441709 - 41441636
Alignment:
| Q |
47 |
tcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacacactgtccacacgaaaatttctagt |
120 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||| |
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| T |
41441709 |
tcatcgatccaacccttaaaaactgatccaaaaccaccttctcctaacacactatccggtcgaaaatttctagt |
41441636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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