View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_27 (Length: 215)
Name: NF7080_low_27
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 2361749 - 2361933
Alignment:
| Q |
14 |
aatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagtt |
113 |
Q |
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| T |
2361749 |
aatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagtt |
2361848 |
T |
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| Q |
114 |
aaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcg |
198 |
Q |
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| T |
2361849 |
aaagcaatggtttactcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcg |
2361933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 2366356 - 2366522
Alignment:
| Q |
17 |
attttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaa |
116 |
Q |
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| T |
2366356 |
attttcatatcttagaagtgcaacggtggattaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaa |
2366455 |
T |
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| Q |
117 |
gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggt |
183 |
Q |
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| T |
2366456 |
gcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggt |
2366522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 2306125 - 2306220
Alignment:
| Q |
88 |
tcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggt |
183 |
Q |
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| T |
2306125 |
tcatcaaactacgtgttagtagagttggatcaatggtttacacatttaacattcaacatggttcttcgaatggttgttgggaaaagatattttggt |
2306220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 2356163 - 2356239
Alignment:
| Q |
117 |
gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
193 |
Q |
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| T |
2356163 |
gcaatggtttattgagttgaatttcaacattgtacttccgatgattgttgggaagcgatattttggtgctatgaatg |
2356239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 2349447 - 2349492
Alignment:
| Q |
46 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcat |
91 |
Q |
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| T |
2349447 |
attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcat |
2349492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 41341688 - 41341835
Alignment:
| Q |
46 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaaca |
145 |
Q |
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| T |
41341688 |
attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca |
41341787 |
T |
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| Q |
146 |
ttgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
193 |
Q |
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| T |
41341788 |
ttgttcttccaatgttggttgggaagcgatattttggagctacgaatg |
41341835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 4303542 - 4303693
Alignment:
| Q |
45 |
gattaaagagctcttcaatgtttggtttagtaaa---aagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttc |
141 |
Q |
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| T |
4303542 |
gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaattgaatata |
4303641 |
T |
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| Q |
142 |
aacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
193 |
Q |
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| T |
4303642 |
gacttggttcttccattgttggttggaaagcgatatttcggttctacaaatg |
4303693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 5805897 - 5805808
Alignment:
| Q |
45 |
gattaaagagctcttcaatgtttggtttagtaaaaagaacgagt------catcaaactacgcgttggtggagttaaagcaatggtttac |
128 |
Q |
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| T |
5805897 |
gattaaagagctcttcaatatttggtctagaaaaaagaacgaatcaaatccatcaaactatgtgttggtggacttgaagcaatggtttac |
5805808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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