View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7080_low_3 (Length: 466)

Name: NF7080_low_3
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7080_low_3
NF7080_low_3
[»] chr8 (11 HSPs)
chr8 (43-459)||(5840104-5840516)
chr8 (52-224)||(5885299-5885466)
chr8 (296-348)||(29490376-29490428)
chr8 (281-349)||(23961665-23961733)
chr8 (296-351)||(10028655-10028710)
chr8 (308-350)||(23768775-23768817)
chr8 (310-348)||(32029662-32029700)
chr8 (294-348)||(41424410-41424464)
chr8 (308-349)||(21136603-21136644)
chr8 (298-351)||(32029411-32029464)
chr8 (367-411)||(42941193-42941237)
[»] scaffold0360 (1 HSPs)
scaffold0360 (43-459)||(4689-5102)
[»] chr6 (8 HSPs)
chr6 (261-347)||(21969298-21969385)
chr6 (292-349)||(8446943-8447000)
chr6 (292-349)||(8455747-8455804)
chr6 (294-350)||(21394256-21394312)
chr6 (294-349)||(3960874-3960929)
chr6 (294-348)||(19122008-19122062)
chr6 (294-350)||(9530549-9530605)
chr6 (296-348)||(26330339-26330391)
[»] chr4 (10 HSPs)
chr4 (363-455)||(6350104-6350192)
chr4 (294-351)||(39051105-39051162)
chr4 (296-348)||(44137393-44137445)
chr4 (301-350)||(55264653-55264702)
chr4 (294-339)||(13302236-13302281)
chr4 (294-339)||(13432688-13432733)
chr4 (294-343)||(13432781-13432830)
chr4 (294-342)||(3692058-3692106)
chr4 (294-350)||(5162836-5162892)
chr4 (309-349)||(40942598-40942638)
[»] chr2 (5 HSPs)
chr2 (295-350)||(22191535-22191590)
chr2 (270-350)||(17184753-17184834)
chr2 (300-351)||(17672952-17673003)
chr2 (296-349)||(32014000-32014053)
chr2 (310-350)||(6511035-6511075)
[»] chr3 (11 HSPs)
chr3 (294-349)||(39840661-39840716)
chr3 (294-348)||(40472832-40472886)
chr3 (294-350)||(55447203-55447259)
chr3 (294-349)||(45965675-45965730)
chr3 (294-339)||(34763141-34763186)
chr3 (298-348)||(3910237-3910287)
chr3 (294-348)||(27812207-27812261)
chr3 (296-350)||(48338573-48338627)
chr3 (294-351)||(40860971-40861028)
chr3 (310-351)||(51862691-51862731)
chr3 (296-348)||(45965827-45965879)
[»] chr7 (7 HSPs)
chr7 (270-339)||(30935371-30935440)
chr7 (294-349)||(42709919-42709974)
chr7 (296-350)||(41008943-41008997)
chr7 (299-348)||(41008801-41008850)
chr7 (306-351)||(26752035-26752080)
chr7 (294-350)||(43669486-43669540)
chr7 (294-338)||(16830294-16830338)
[»] scaffold0154 (1 HSPs)
scaffold0154 (296-348)||(6243-6295)
[»] chr5 (9 HSPs)
chr5 (294-345)||(39643020-39643071)
chr5 (294-350)||(31046162-31046218)
chr5 (278-349)||(36184758-36184830)
chr5 (308-350)||(8285259-8285301)
chr5 (294-348)||(11275811-11275865)
chr5 (294-351)||(12640232-12640288)
chr5 (298-339)||(39174627-39174668)
chr5 (294-350)||(31051223-31051279)
chr5 (294-350)||(31066103-31066159)
[»] chr1 (8 HSPs)
chr1 (294-349)||(38783894-38783949)
chr1 (308-350)||(15395209-15395251)
chr1 (294-351)||(8792969-8793026)
chr1 (296-348)||(1818406-1818458)
chr1 (294-350)||(28504713-28504769)
chr1 (295-348)||(27293283-27293336)
chr1 (294-339)||(38576576-38576621)
chr1 (294-350)||(46410844-46410900)
[»] scaffold0022 (1 HSPs)
scaffold0022 (294-351)||(122561-122618)
[»] scaffold0066 (1 HSPs)
scaffold0066 (296-348)||(11992-12044)
[»] scaffold0340 (1 HSPs)
scaffold0340 (294-348)||(10875-10929)
[»] scaffold0137 (1 HSPs)
scaffold0137 (294-348)||(17102-17156)
[»] scaffold0528 (1 HSPs)
scaffold0528 (294-350)||(1662-1718)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 43 - 459
Target Start/End: Original strand, 5840104 - 5840516
Alignment:
Q  43 gaaagaaacatcagaggtattttgcctagttctctaatataacttttgccatttggaaaaaggaaatattaattnnnnnnngtttatcttcgattgcaaa 142  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||       |||||||||||||||||||    
T  5840104 gaaagaaacatcagagatattttgcctagttctctaatataacttttgccatttagaaaaaagaaatattaattaaaaaaagtttatcttcgattgcaaa 5840203  T
Q  143 atagtattcttagttattcttatagattggtgcatgcttcaacaaacaagtaaataacttaaatcatagagtatatgcatgctggcgtctaggtcacatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5840204 atagtattcttagttattcttatagattggtgcatgcttcaacaaacaagtaaataacttaaatcatagagtatatgcatgctggcgtctaggtcacatt 5840303  T
Q  243 taagaactgcctttggagaaaataaaggagtgaactatcaatttggttatttctttgtaagttactctcaaattagtctctgattctattaatattttaa 342  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5840304 taagaactgcctttggagaaaataaaggagtaaactaccaatttggttatgtctttgtaagttactctcaaattagtctctgattctattaatattttaa 5840403  T
Q  343 aatagtcttgatttgaactgggtaaaggaagtggacgagattgtggaggagatcaaagtcttatcttggcaatgaagtttaattatcaaggttgaggaac 442  Q
    ||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||    
T  5840404 aatagtcttaatttgaaccgggtaaagtaagtggacgagattgtggaggaggtcaaagtcttatcttggcaatgaagt----ttatcaaggttgaggaac 5840499  T
Q  443 gcctcgtgtctctgcta 459  Q
    |||||||||||||||||    
T  5840500 gcctcgtgtctctgcta 5840516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 5885299 - 5885466
Alignment:
Q  52 atcagaggtattttgcctagttctctaatataacttttgccatttggaaaaaggaaatattaattnnnnnnngtttatcttcgattgcaaaatagtattc 151  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||    
T  5885299 atcaggggtattttgtctagttctataatataatttttgccatttagaaaaaggaaatattaattaaaaaa-gtttatcttcgattgcaaaatagtattc 5885397  T
Q  152 ttagttattcttatagattggtgcatgcttcaacaaacaagtaaataacttaaatcatagagtatatgcatgc 224  Q
    |||||||||||||||||||||||||||||||    |||||||| |||||||||||||||||||||||| ||||    
T  5885398 ttagttattcttatagattggtgcatgcttc----aacaagtacataacttaaatcatagagtatatgtatgc 5885466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 29490376 - 29490428
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||    
T  29490376 tttgtaagtcactatcaaattagtctatgattatattaatattttaaaatagt 29490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 23961733 - 23961665
Alignment:
Q  281 caatttggttatttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    |||||| || || ||||||||||| | | |||||| |||||||||||| |||||||||| |||||||||    
T  23961733 caatttagtcatgtctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtc 23961665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 10028655 - 10028710
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||| | ||||||||||||| |||| ||||||||||||| ||| |||||||    
T  10028655 tttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctt 10028710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 23768775 - 23768817
Alignment:
Q  308 tctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    |||||||||||||| | ||| ||||||||||||||||||||||    
T  23768775 tctcaaattagtctataattttattaatattttaaaatagtct 23768817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 32029700 - 32029662
Alignment:
Q  310 tcaaattagtctctgattctattaatattttaaaatagt 348  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  32029700 tcaaattagtctctgactctatttatattttaaaatagt 32029662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 41424410 - 41424464
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||||| | | |||||| ||||||||| ||||||||||||||||| ||||    
T  41424410 tctttgtaagtaattttcaaatcagtctctgactctattaatattttaaattagt 41424464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 21136603 - 21136644
Alignment:
Q  308 tctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  21136603 tctcaaattagtctttgactctattaatatttcaaaatagtc 21136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 32029411 - 32029464
Alignment:
Q  298 tgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||| | |||||||||| ||||||| ||| ||||||||| |||||||||||    
T  32029411 tgtaagtgattctcaaattaatctctgactctgttaatatttcaaaatagtctt 32029464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 42941193 - 42941237
Alignment:
Q  367 aaggaagtggacgagattgtggaggagatcaaagtcttatcttgg 411  Q
    ||||| ||||| |||||||||||||| |||||||| |||||||||    
T  42941193 aaggatgtggatgagattgtggaggaaatcaaagttttatcttgg 42941237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 43 - 459
Target Start/End: Complemental strand, 5102 - 4689
Alignment:
Q  43 gaaagaaacatcagaggtattttgcctagttctctaatataacttttgccatttggaaaaaggaaatattaattnnnnnnngtttatcttcgattgcaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||       || ||||||||||||||||    
T  5102 gaaagaaacatcagaggtattttgcctagttctctaatataactttttccatttagaaaaaggaaatattaattaaaaaaagtatatcttcgattgcaaa 5003  T
Q  143 atagtattcttagttattcttatagattggtgca-tgcttcaacaaacaagtaaataacttaaatcatagagtatatgcatgctggcgtctaggtcacat 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5002 atagtattcttagttattcttatagattggtgcaatgcttcaacaaacaagtaaataacttaaatcatagagtatatgcatgctggcctctaggtcacat 4903  T
Q  242 ttaagaactgcctttggagaaaataaaggagtgaactatcaatttggttatttctttgtaagttactctcaaattagtctctgattctattaatatttta 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4902 ttaagaactgcctttggagaaaataaaggagtgaactatcaatttggttatttctttgtaaattattctcaaattagtctctgattctattaatatttta 4803  T
Q  342 aaatagtcttgatttgaactgggtaaaggaagtggacgagattgtggaggagatcaaagtcttatcttggcaatgaagtttaattatcaaggttgaggaa 441  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||||    
T  4802 aaatagtcttaatttgaaccgggtaaaggaagtggacgagattgtggaggaggtcaaagtcttatcttggcaatgaagt----ttatcaaggttgaggaa 4707  T
Q  442 cgcctcgtgtctctgcta 459  Q
    ||||||||||||||||||    
T  4706 cgcctcgtgtctctgcta 4689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 21969385 - 21969298
Alignment:
Q  261 aaaataaaggagtgaactatcaatttggttatt-tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatag 347  Q
    ||||||||||||| |||||| || ||||| ||| ||||||||||| | |||||||||||||||||| || ||||||||||||||||||    
T  21969385 aaaataaaggagtaaactataaaattggtcattatctttgtaagtgaatctcaaattagtctctgactcaattaatattttaaaatag 21969298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 8446943 - 8447000
Alignment:
Q  292 tttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||| ||||| | | ||||||||||| |||||||||||||||||| |||||||||    
T  8446943 tttctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtc 8447000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 8455747 - 8455804
Alignment:
Q  292 tttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||| ||||| | | ||||||||||| |||||||||||||||||| |||||||||    
T  8455747 tttctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtc 8455804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 21394256 - 21394312
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||  |||||||||||||||  | | ||||||||||||||||||||||||    
T  21394256 tctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtct 21394312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 3960929 - 3960874
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||||||| | ||||| |||||| ||| ||||||||||||||||| |||||    
T  3960929 tctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtc 3960874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 19122062 - 19122008
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||||| ||| |||||||||||| ||| ||||||||||||| ||| ||||    
T  19122062 tctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagt 19122008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 9530549 - 9530605
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | |||||||||||||||| | | ||||||||||| ||| ||||||    
T  9530549 tctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtct 9530605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 26330391 - 26330339
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||| | | |||||||||||  ||| ||||||||||||||||||||||    
T  26330391 tttgtaagtgattatcaaattagtcattgactctattaatattttaaaatagt 26330339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 6350192 - 6350104
Alignment:
Q  363 ggtaaaggaagtggacgagattgtggaggagatcaaagtcttatcttggcaatgaagtttaattatcaaggttgaggaacgcctcgtgtctct 455  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||    |||||||||  ||||||||||| ||||||||    
T  6350192 ggtaaaggaagtggacaagattgtggaggaggtcaaagtcttatcttggcaatggtgt----ttatcaagggagaggaacgccttgtgtctct 6350104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 39051105 - 39051162
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  39051105 tctttgtaagtcactctcaaattagtcattgattctattaatattttaaaatagtctt 39051162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 44137393 - 44137445
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||| | |||||||||||||||||| ||||||||||||| ||||||||    
T  44137393 tttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagt 44137445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 55264702 - 55264653
Alignment:
Q  301 aagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    |||| |||||||||||||||||||| ||||||||||||| |||| |||||    
T  55264702 aagtgactctcaaattagtctctgaatctattaatatttcaaaagagtct 55264653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 13302281 - 13302236
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattt 339  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  13302281 tctttgtaagtcactctcaaattagtcctcgattctattaatattt 13302236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 13432688 - 13432733
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattt 339  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  13432688 tctttgtaagtaactctcaaattagtcctcgattctattaatattt 13432733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 13432830 - 13432781
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaa 343  Q
    ||||||||||| | |||||||||||||| || ||||||||| ||||||||    
T  13432830 tctttgtaagtcattctcaaattagtctatgcttctattaacattttaaa 13432781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 3692058 - 3692106
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaa 342  Q
    |||||||||  |||||| |||||||||| | ||||||||||||||||||    
T  3692058 tctttgtaaactactcttaaattagtctatcattctattaatattttaa 3692106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 5162836 - 5162892
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||| ||||| | |||||||||||||||| | ||||||||||||| ||| ||||||    
T  5162836 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 5162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 40942598 - 40942638
Alignment:
Q  309 ctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  40942598 ctcaaattagtgtctgattttattaatattttaaactagtc 40942638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 22191590 - 22191535
Alignment:
Q  295 ctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  22191590 ctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtct 22191535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 17184753 - 17184834
Alignment:
Q  270 gagtgaactatcaatttggtt-atttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    |||| ||||||||| |||||| || |||||||||| || | ||||| |||||||||| ||||||||||||||||| ||||||    
T  17184753 gagtaaactatcaaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtct 17184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 17672952 - 17673003
Alignment:
Q  300 taagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||| |||||||||||||||||  ||||||||||||||| |||||||||||    
T  17672952 taagtcactctcaaattagtctccaattctattaatatttcaaaatagtctt 17673003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 32014053 - 32014000
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||| | |||||||||||||| ||| |||||| |||||| |||||||||    
T  32014053 tttgtaagtgattctcaaattagtctatgactctattgatatttcaaaatagtc 32014000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 6511035 - 6511075
Alignment:
Q  310 tcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    |||||||||||| ||||||| ||||||||| ||||||||||    
T  6511035 tcaaattagtctatgattctgttaatatttcaaaatagtct 6511075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 39840661 - 39840716
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||    
T  39840661 tctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtc 39840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 40472832 - 40472886
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  40472832 tctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagt 40472886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 55447259 - 55447203
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | |||||||| ||||||||| ||| ||||||||||||||||||||    
T  55447259 tctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtct 55447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 45965675 - 45965730
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||| || ||||||    
T  45965675 tctttgtaagtcgctctcaaattaatctctgattctattaatatttcaatatagtc 45965730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 34763186 - 34763141
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattt 339  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||    
T  34763186 tctttgtaagttgttctcaaattaatctctgattctattaatattt 34763141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 3910237 - 3910287
Alignment:
Q  298 tgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    |||||| |||||||||||||||| || | ||||||||||||||||| ||||    
T  3910237 tgtaagctactctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 27812207 - 27812261
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||||| ||| ||||    
T  27812207 tctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagt 27812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 48338627 - 48338573
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||| | | |||||||||||||||| ||||||||||| | ||||||||||    
T  48338627 tttgtaagtgattatcaaattagtctctgactctattaatatatcaaaatagtct 48338573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 40861028 - 40860971
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||||| | ||| || ||||||||||||| ||||||||||| ||| |||||||    
T  40861028 tctttgtaagtcattcttaatttagtctctgattttattaatatttcaaattagtctt 40860971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 51862731 - 51862691
Alignment:
Q  310 tcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  51862731 tcaaattagtc-ctgactctattaatattttaaaatagtctt 51862691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 45965879 - 45965827
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||| |||||||||||||| | ||| ||||||||||||| ||| ||||    
T  45965879 tttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagt 45965827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 30935440 - 30935371
Alignment:
Q  270 gagtgaactatcaatttggttatttctttgtaagttactctcaaattagtctctgattctattaatattt 339  Q
    |||| ||||||||| |||||| | ||||||||||| ||||||||||||||||| || | |||||||||||    
T  30935440 gagtaaactatcaaattggttctctctttgtaagtcactctcaaattagtctccgactttattaatattt 30935371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 42709919 - 42709974
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||||| | |||||||| |||||| || |||||||||||||||||||||||    
T  42709919 tctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtc 42709974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 41008997 - 41008943
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||| | | |||||||| ||||||| ||||||||||||||||||||||||    
T  41008997 tttgtaagtcattttcaaattaatctctgactctattaatattttaaaatagtct 41008943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 41008801 - 41008850
Alignment:
Q  299 gtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||||||||    
T  41008801 gtaagtcattctcaaactagtctgtgattctattaatattttaaaatagt 41008850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 26752080 - 26752035
Alignment:
Q  306 actctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    |||||||||||||||||||| | | ||| |||||||||||||||||    
T  26752080 actctcaaattagtctctgactttgttattattttaaaatagtctt 26752035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 43669540 - 43669486
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||  ||| ||||||||||||  || ||||||||||||||||||||||||    
T  43669540 tctttgtaagccactttcaaattagtct--gactctattaatattttaaaatagtct 43669486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 16830294 - 16830338
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatatt 338  Q
    ||||||||||| |||||||||||||| ||  ||||||||||||||    
T  16830294 tctttgtaagtcactctcaaattagtgtcaaattctattaatatt 16830338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 6295 - 6243
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||    
T  6295 tttgtaagttattctcaaattagtctttgactctattaatatttcaaaatagt 6243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 39643020 - 39643071
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaat 345  Q
    ||||||||||||||||| |||||||| | ||| |||||||||||||||||||    
T  39643020 tctttgtaagttactctaaaattagtttatgactctattaatattttaaaat 39643071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 31046218 - 31046162
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | ||||||||||  ||| || ||||||||||||||||||||||||    
T  31046218 tctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtct 31046162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 36184830 - 36184758
Alignment:
Q  278 tatcaatttggttatt-tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||||||  || ||||||||| | |||||||||||||||||| | ||||||| ||||| |||||||||    
T  36184830 tatcaatttggtatttgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtc 36184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 8285301 - 8285259
Alignment:
Q  308 tctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||||| |||| | ||||||||||||||||||||||    
T  8285301 tctcaaattagtccctgactatattaatattttaaaatagtct 8285259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 11275865 - 11275811
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||| | | |||||||||||||||||| | ||||||||||||||| ||||    
T  11275865 tctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagt 11275811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 12640288 - 12640232
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||||| | ||||||||||||| |||| |||||||||| || |||||||||||    
T  12640288 tctttgtaagtgattctcaaattagtcactgaatctattaata-ttcaaaatagtctt 12640232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 39174627 - 39174668
Alignment:
Q  298 tgtaagttactctcaaattagtctctgattctattaatattt 339  Q
    ||||||||||| ||||||| |||||||| |||||||||||||    
T  39174627 tgtaagttactttcaaattcgtctctgactctattaatattt 39174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 31051279 - 31051223
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | ||||||||||| | | || |||| |||||||||||||||||||    
T  31051279 tctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtct 31051223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 31066159 - 31066103
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | ||| ||||||| | | || ||||||||||||||||||||||||    
T  31066159 tctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtct 31066103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 38783894 - 38783949
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 349  Q
    ||||||||||| ||| |||||||||||  ||| |||||||||||||||||||||||    
T  38783894 tctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtc 38783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 15395209 - 15395251
Alignment:
Q  308 tctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  15395209 tctcaaattagtctatgactctattaatattttaaaatagtct 15395251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 8792969 - 8793026
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||||| |||||||||||||||||  | ||||||||||||| |||||| ||||    
T  8792969 tctttgtaagtcactctcaaattagtctccaactctattaatatttcaaaataatctt 8793026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 1818458 - 1818406
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||| | |||||||||| | ||||| ||||||||||||||||||||||    
T  1818458 tttgtaagtgattctcaaattaatatctgactctattaatattttaaaatagt 1818406  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 28504713 - 28504769
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | |||||||||||||| ||| ||||||||||||| ||| ||||||    
T  28504713 tctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtct 28504769  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 27293283 - 27293336
Alignment:
Q  295 ctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    |||||||| | | |||||||||||||||||| ||||||||||||| ||| ||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagt 27293336  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 38576576 - 38576621
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattt 339  Q
    ||||||||| | | |||||||||||||| |||||||||||||||||    
T  38576576 tctttgtaaatcattctcaaattagtctttgattctattaatattt 38576621  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 46410900 - 46410844
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | |||||| ||||||| ||| |||| |||||||| ||||||||||    
T  46410900 tctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtct 46410844  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 122618 - 122561
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 351  Q
    ||||||||||  | |||||||||||||||||| ||||||||||||| ||| |||||||    
T  122618 tctttgtaagaaattctcaaattagtctctgactctattaatatttcaaactagtctt 122561  T

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Target: scaffold0066 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 11992 - 12044
Alignment:
Q  296 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||||||||||||||||||| || | | ||| ||||||||||||||||||||    
T  11992 tttgtaagttactctcaaatttgtttttaattttattaatattttaaaatagt 12044  T

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Target: scaffold0340 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 10875 - 10929
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    ||||| ||||| | |||| ||||||||| ||||| ||||||||||||||||||||    
T  10875 tctttttaagtgattctctaattagtctatgattttattaatattttaaaatagt 10929  T

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Target: scaffold0137 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 17102 - 17156
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 348  Q
    |||||||||| |||||||||||||||| |  | ||||||||||||||||| ||||    
T  17102 tctttgtaagatactctcaaattagtcccaaactctattaatattttaaactagt 17156  T

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Target: scaffold0528 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 1662 - 1718
Alignment:
Q  294 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 350  Q
    ||||||||||| | ||||||||||| | | || |||| |||||||||||||||||||    
T  1662 tctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtct 1718  T

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