View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7080_low_6 (Length: 408)
Name: NF7080_low_6
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 52034995 - 52034612
Alignment:
| Q |
10 |
aagaatataattgtatctctcccaccacttcttacgatatttgtggataaaatagttaaatataactgcaacagtaatccatgaattgaaattcactgtg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034995 |
aagaatataattgtatctctcccaccacttcttacgatatttgtggataaaatagttaaatataactgcaacagtaatccatgaattgaaattcactgtg |
52034896 |
T |
|
| Q |
110 |
ctagctggtggcatacttgcagttgcaccaagcagaacaggaatgtgaatgtatgatatccatttttgactgggaaaggcttttattagggcccatatga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034895 |
ctagctggtggcatacttgcagttgcaccaagcagaacaggaatgtgaatgtatgatatccatttttgactgggaaaggcttttattagggcccatatga |
52034796 |
T |
|
| Q |
210 |
ttattgggctcagtagtccaattaggaaggcccagttcagcttttcgtagtttcctagtggcccaaaaattcttcttggtcccaccaaaccccatataac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034795 |
ttattgggctcagtagtccaattaggaaggcccagttcagcttttcgtagtttcctagtggcccaaaaattcttcttggtcccaccaaaccccatataac |
52034696 |
T |
|
| Q |
310 |
ggaggcatcaaagaacacgttgtcatttgggcatgtccatggactacctttgggaagttgatcttcatggcatatgttctttat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034695 |
ggaggcatcaaagaacacgttgtcatttgggcatgtccatggactacctttgggaagttgatcttcatggcatatgttctttat |
52034612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University