View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_7 (Length: 389)
Name: NF7080_low_7
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 46936489 - 46936860
Alignment:
| Q |
18 |
gttaccatgtagatttgacattagtgatttcgtaagaagtacttgactgtgattcaaagatacaatctgatattgcttttcactatacaatcacataaag |
117 |
Q |
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| T |
46936489 |
gttaccatgtcgatttgacattagtgatttcgtaagaagtacttgactgtcattcaaagatacaatctgatattgcttttcactatacaatcacataaag |
46936588 |
T |
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| Q |
118 |
aataaaatcaatttcgtttaaaacactaaacaaattatttagaacttgagcttgagaaggaatggcattttgtctgagaaaggagggtcagagtattttc |
217 |
Q |
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| T |
46936589 |
aataaaatcaatttcgtttaaaacactaaacaaattatttagaacttgagcttgagaaggaatggcattctgtctgagaaaggagggtcagagtattttc |
46936688 |
T |
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| Q |
218 |
cagtgagaatctttgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgctgt |
317 |
Q |
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| T |
46936689 |
cagtgagaatctgtgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgctgt |
46936788 |
T |
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| Q |
318 |
aattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaattgtggacctcc |
389 |
Q |
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| T |
46936789 |
aattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctcc |
46936860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 36635208 - 36635096
Alignment:
| Q |
220 |
gtgagaatctttgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgctgtaa |
319 |
Q |
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| T |
36635208 |
gtgagaatttgtgatgcaacatattgatttgaagcctcagtgtaatgagtcccgtcccagcttacatacacaccgctatcattgcaaccttttgctgtaa |
36635109 |
T |
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| Q |
320 |
ttgtggttccatt |
332 |
Q |
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| T |
36635108 |
ttgtggtcccatt |
36635096 |
T |
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