View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7080_low_9 (Length: 368)
Name: NF7080_low_9
Description: NF7080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7080_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 187 - 367
Target Start/End: Complemental strand, 1244308 - 1244128
Alignment:
| Q |
187 |
taataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggtagtgactaagataagtgtgtatggt |
286 |
Q |
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| T |
1244308 |
taataatcttaatgtattcatatccttttaatttactcttctacacgtcttttttgacttaagcttcttaatggtagtgactaagataagtgtgtatggt |
1244209 |
T |
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| Q |
287 |
tattttaagttaatttatgcaacatatgacatgcctcatcaatatttctagaattatttccaaacctgaaatttgtaagac |
367 |
Q |
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| T |
1244208 |
tattttaagttaatttatgcaacatatgacatgcctcatcaatatttctagaattatttccaaacctgaaatttgtaagac |
1244128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 1244489 - 1244375
Alignment:
| Q |
13 |
tttggtgttgttttaatgtataaaatttattttaaaatctaaacctcgaagccaaaatttactacaacaaggaatctatccataataattgttgatggat |
112 |
Q |
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| T |
1244489 |
tttggtgttgttttaatgtataaaatttattttaaaatctaaccctcgaagccaaaatttactacaacaaggaatctatccataataattgttgatggat |
1244390 |
T |
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| Q |
113 |
ccacaagaaaaaaca |
127 |
Q |
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| T |
1244389 |
ccacaagaaaaaaca |
1244375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 165 - 365
Target Start/End: Complemental strand, 1248628 - 1248437
Alignment:
| Q |
165 |
tcttctcctacatacatatatctaataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggtagt |
264 |
Q |
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| T |
1248628 |
tcttttcctacatacatatatctaataatcttaatgtatccttatccttttaatttacccttctacacattttttt----------tacttaatggctgt |
1248539 |
T |
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| Q |
265 |
gactaagataagtgtgtatggttattttaagttaatttatgcaa-catatgacatgcctcatcaatatttctagaattatttccaaacctgaaatttgta |
363 |
Q |
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| T |
1248538 |
gactaagataattatgtatggtgattttaagttattttatccaaccatatgacatgcttcatgaatgtttttggaattatttcaaaacctgaaatttgta |
1248439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 1234226 - 1234170
Alignment:
| Q |
310 |
atatgacatgcctcatcaatatttctagaattatttccaaacctgaaatttgtaagac |
367 |
Q |
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| T |
1234226 |
atatgacatgcttcatcactatttctagaattatttccaaa-ctgaaatttataagac |
1234170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 1228798 - 1228723
Alignment:
| Q |
186 |
ctaataatcttaatgtattcatatccttttaatttactcttctacacatcttttttgacttaagcttcttaatggt |
261 |
Q |
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| T |
1228798 |
ctaatattcttaatgtatccttatccttttactttactcatccccacttttttttttacttaagcttcttaatggt |
1228723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 367
Target Start/End: Complemental strand, 1232530 - 1232500
Alignment:
| Q |
337 |
gaattatttccaaacctgaaatttgtaagac |
367 |
Q |
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| T |
1232530 |
gaattatttccaaacctgaaatttgtaagac |
1232500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 1234409 - 1234369
Alignment:
| Q |
178 |
acatatatctaataatcttaatgtattcatatccttttaat |
218 |
Q |
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| T |
1234409 |
acatatatctaataatcttaatctatccttatccttttaat |
1234369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 1244337 - 1244305
Alignment:
| Q |
120 |
aaaaaacaactaattataatacagaatcttaat |
152 |
Q |
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| T |
1244337 |
aaaaaacaactaattataatacagactcttaat |
1244305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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