View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7082_high_2 (Length: 585)
Name: NF7082_high_2
Description: NF7082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7082_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 38184279 - 38183846
Alignment:
| Q |
1 |
tgctcaggcctttcagattgatgctaaacaggttgatgaaataaagacaaaggttgctcctaagaagacttaatttataatgttcaagaggggaaaaaag |
100 |
Q |
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| T |
38184279 |
tgctcaggcctttcagattgatgctaaacaggttgatgaaataaagacaaaggttgctcctaagaagacttaatttataatgttcaagaggggaaaaaag |
38184180 |
T |
|
| Q |
101 |
ttcagtgttttgactgttttcaatcatttttactttctatttttgaaaataattcttgaagggttatgatgattattgtatttgtaccatttattatggt |
200 |
Q |
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| T |
38184179 |
ttcagtgttttgactgttttcaatcatttttactttctatttttgaaaataattcttgaagggttatgatgattattgtatttgtaccatttattatggt |
38184080 |
T |
|
| Q |
201 |
gttacatatagtaagtgcg--------tgttgatgatat---taataataatgcaaattctatgaactatgaagtaggtagaatgtgtcacattttatgt |
289 |
Q |
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| T |
38184079 |
gttacatatagtaagtacgtgttgaactgttgatgatattaataataataatgcaaatt-------ctatgaagtagctagaatgtgtcacattttatgt |
38183987 |
T |
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| Q |
290 |
gggatatattgtttctttcttctgtctgtggttagatgcttttgtgggcattgaacaaggattgtacttgtagctttataacctcactttctctttcatg |
389 |
Q |
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| T |
38183986 |
gggatatattgtttctttcttctgtctgtggttagatgcttttgtgggcattgaacaaggattgtacttgtagctttataacctcactttctctttcatg |
38183887 |
T |
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| Q |
390 |
atggttagatgttaaatcagtatggtgagatgcatacatct |
430 |
Q |
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| T |
38183886 |
atagttagatgttaaatcaatatggtgagatgcatacatct |
38183846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 482 - 569
Target Start/End: Complemental strand, 38183731 - 38183645
Alignment:
| Q |
482 |
gggattttgaaaaaactatatgaataagatcaatttcaatatttttatacaannnnnnnaaaaataaatttaggtataactgaatatt |
569 |
Q |
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| T |
38183731 |
gggattttgaaaaaactatatgaataagatcaatttcaatatttttatccaattttttt-aaaataaatttaggtataactgaatatt |
38183645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 218 - 430
Target Start/End: Complemental strand, 49011404 - 49011200
Alignment:
| Q |
218 |
cgtgttgatgatattaataataatgcaaattctatgaactatgaagtaggtagaatgtgtcacattttatgtgggatatattgtttc-tttcttctgtct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||| | ||| |||||||||||| |
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| T |
49011404 |
cgtgttgatgatattaataataatgcaaattctatgaa-------gtagctagaatatgtcaaattttatgtgggatatatggcttcgtttcttctgtct |
49011312 |
T |
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| Q |
317 |
gtggttagatgcttttgtgggcattgaacaaggattgtacttgtagctttataacctcactttctctttcatgatggttagatgttaaatcagtatggtg |
416 |
Q |
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| T |
49011311 |
gtggttagctgcttttgtgggaattgaacaaggattgtactt--agctttatcacctcactttctctttcataatggttagatgttaaatcagtatggta |
49011214 |
T |
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| Q |
417 |
agatgcatacatct |
430 |
Q |
| |
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|||||||||||||| |
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| T |
49011213 |
agatgcatacatct |
49011200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 526
Target Start/End: Complemental strand, 49011165 - 49011122
Alignment:
| Q |
483 |
ggattttgaaaaaactatatgaataagatcaatttcaatatttt |
526 |
Q |
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| T |
49011165 |
ggattttgaaaaaactatacgaataagatcaatttcaatatttt |
49011122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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