View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7082_high_3 (Length: 560)
Name: NF7082_high_3
Description: NF7082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7082_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 40677792 - 40678335
Alignment:
| Q |
1 |
tagaggtgttgacgaagaagccattttgaaatccttgcctgttgatcttcgccgccagattcagaggcatctctgtcttgacattgttcgccgggtaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40677792 |
tagaggtgttgacgaagaagccattttgaaatccttgcctgttgatcttcgccgccagattcagaggcatctctgtcttgacattgttcgccgggtaagt |
40677891 |
T |
|
| Q |
101 |
ctcttgttattagttgaaaatgtgtatacatcttgaatactattacgattttttatagaagccgtagataatagaaaagtaatatgcaaattgtattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40677892 |
ctcttgttattagttgaaaatgtgtatacatcttgaatactattacgattttttatagaagccgtagataatagaaaagtaatatgcaaattgtattgat |
40677991 |
T |
|
| Q |
201 |
aatgagaacgttaattacacgaagaggtacaataagacttatatagccagtgcgaacaatttagtagtataactaacttttacatctaatcacattaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40677992 |
aatgagaacgttaattacacgaagaggtacaataagacttatatagccagtgcgaacaatttagtagtataactaacttttacatctaatcacattaata |
40678091 |
T |
|
| Q |
301 |
attgttgtcgtgttcaggtaccatttttcggccaaatggatgatcagcttctagatgctatatgtgaacgtttagtatcatcattgaacacaaaaggctc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40678092 |
attgttgtcgtgttcaggtaccatttttcggccaaatggatgatcagcttctagatgctatatgcgaacgtttagtatcatcattgaacacaaaaggctc |
40678191 |
T |
|
| Q |
401 |
atacatagttagagaaggtgatccagtgaaagagatgctttttatcatcagaggaagtatagacagttctacaacagatggtggtagatcaggattcttc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40678192 |
atacatagttagagaaggtgatccagtgaaagagatgctttttatcatcagaggaagtatagacagttctacaacagatggtggtagatcaggattcttc |
40678291 |
T |
|
| Q |
501 |
aattcaatcacactaaaaccaggtgatttttgtggtgaagaatt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40678292 |
aattcaatcacactaaaaccaggtgatttttgtggtgaagaatt |
40678335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 454
Target Start/End: Original strand, 50399671 - 50399792
Alignment:
| Q |
333 |
caaatggatgatcagcttctagatgctatatgtgaacgtttagtatcatcattgaacacaaaaggctcatacatagttagagaaggtgatccagtgaaag |
432 |
Q |
| |
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|||||||||||||| || || ||||| ||||| || || || |||||||| |||| || ||||| ||||||| || |||||||| |||||||| | | |
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| T |
50399671 |
caaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagagaaggagatccagttaccg |
50399770 |
T |
|
| Q |
433 |
agatgctttttatcatcagagg |
454 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
50399771 |
agatgctttttatcatcagagg |
50399792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 544
Target Start/End: Complemental strand, 13112627 - 13112416
Alignment:
| Q |
333 |
caaatggatgatcagcttctagatgctatatgtgaacgtttagtatcatcattgaacacaaaaggctcatacatagttagagaaggtgatccagtgaaag |
432 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||||| | ||||||||| | | |||| ||||| |||| ||| || ||| | ||||| || | | |
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| T |
13112627 |
caaatggatgatcaactacttgatgcaatatgtgaacgccttgtatcatcactaagcacacaaggcacatatatatttcaagaggacgatccggtagatg |
13112528 |
T |
|
| Q |
433 |
agatgctttttatcatcagaggaagtatagacagttctacaacagatggtggtagatcaggattcttcaattcaatcacactaaaaccaggtgatttttg |
532 |
Q |
| |
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| ||| | |||||||| ||||||| | || |||||||||||| |||| || || | ||||||||||||||||||||||||| ||||| || ||||| |
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| T |
13112527 |
aaatgttgtttatcattagaggaacattggagagttctacaacaaatggaggaaggtatggattcttcaattcaatcacactaaggccaggagacttttg |
13112428 |
T |
|
| Q |
533 |
tggtgaagaatt |
544 |
Q |
| |
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||| |||||||| |
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| T |
13112427 |
tggagaagaatt |
13112416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 30963597 - 30963484
Alignment:
| Q |
175 |
aaaagtaatatgcaaattgtattgataatgagaacgttaattacacgaagaggtacaataagacttatatagccagtgcgaacaatttagtagtataact |
274 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| || | |||||| | ||||||||||||| | ||||||||| || |||||| || | | ||| | ||| |
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| T |
30963597 |
aaaagtaatatacaaatagtattgataatgaaaatggtaattatatgaagaggtacaatggggcttatatagtcaatgcgaataactaatgagtgtgact |
30963498 |
T |
|
| Q |
275 |
aacttttacatcta |
288 |
Q |
| |
|
|||||||||||||| |
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| T |
30963497 |
aacttttacatcta |
30963484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 6894950 - 6894982
Alignment:
| Q |
176 |
aaagtaatatgcaaattgtattgataatgagaa |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
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|
| T |
6894950 |
aaagtaatatacaaattgtattgataatgagaa |
6894982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 45409452 - 45409486
Alignment:
| Q |
171 |
atagaaaagtaatatgcaaattgtattgataatga |
205 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
45409452 |
atagaaaagtaatatacaaattgtattgataatga |
45409486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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