View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7082_high_4 (Length: 461)
Name: NF7082_high_4
Description: NF7082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7082_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 21 - 453
Target Start/End: Original strand, 18691450 - 18691896
Alignment:
| Q |
21 |
agtctgcatgcaatgcattcacattttcttgatctagtattctt--gtgttgtattatctctaatccttattataagaaaatctttgaagattattttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691450 |
agtctgcatgcaatgcattcacattttcttgatctagtattcttttgtgttgtattatctctaatccttattataagaaaatctttgaagattattttgg |
18691549 |
T |
|
| Q |
119 |
ccctattcattagaaaatctctaatcacaatttttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691550 |
ccctattcattagaaaatctctaatcacaatttttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgtt |
18691649 |
T |
|
| Q |
219 |
ccaaagtcaattctatacacatcaattctaacccttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtgga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691650 |
ccaaagtcaattctatacacatcaattctaacccttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtgga |
18691749 |
T |
|
| Q |
319 |
ttatagattaaataaagaccggccaaaattcacaactttaacaccttacaaggaaaccaaata------------ttaaattgcacaaccaatatttaac |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18691750 |
ttatagattaaataaagaccggccaaaattcacaactttaacaccttacaaggaaaccaaatattgtagggctttttaaattgcacaaccaatatttaac |
18691849 |
T |
|
| Q |
407 |
attactaccctattgtttgtccattttctcttatatctattcatctc |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
18691850 |
attactaccctattgtttgtccattttctcttatatccatccatctc |
18691896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University