View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7082_low_2 (Length: 273)

Name: NF7082_low_2
Description: NF7082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7082_low_2
NF7082_low_2
[»] chr1 (7 HSPs)
chr1 (24-255)||(235193-235424)
chr1 (16-253)||(8814256-8814496)
chr1 (8-241)||(251292-251516)
chr1 (8-253)||(246849-247085)
chr1 (124-253)||(231557-231692)
chr1 (204-253)||(4439842-4439891)
chr1 (204-253)||(18991186-18991235)
[»] chr6 (11 HSPs)
chr6 (125-253)||(7041478-7041606)
chr6 (104-253)||(7025732-7025887)
chr6 (125-253)||(7046821-7046949)
chr6 (8-253)||(7012796-7013053)
chr6 (104-253)||(9159480-9159635)
chr6 (104-197)||(7029851-7029944)
chr6 (25-74)||(212987-213036)
chr6 (8-253)||(9170793-9171035)
chr6 (8-74)||(7029980-7030046)
chr6 (16-72)||(7025925-7025981)
chr6 (8-60)||(9159393-9159445)
[»] chr3 (17 HSPs)
chr3 (124-242)||(9343838-9343956)
chr3 (124-242)||(9448307-9448425)
chr3 (137-253)||(41985610-41985726)
chr3 (145-253)||(9617489-9617597)
chr3 (137-253)||(9655375-9655491)
chr3 (9-74)||(9494719-9494784)
chr3 (137-253)||(9646382-9646498)
chr3 (171-253)||(9494860-9494942)
chr3 (204-253)||(9407348-9407397)
chr3 (204-253)||(9425555-9425604)
chr3 (127-253)||(9352883-9353009)
chr3 (211-253)||(9626572-9626614)
chr3 (205-239)||(16011768-16011802)
chr3 (204-253)||(9377068-9377117)
chr3 (204-253)||(9397767-9397816)
chr3 (132-197)||(9695629-9695694)
chr3 (145-253)||(41980836-41980944)
[»] chr2 (1 HSPs)
chr2 (132-253)||(20694314-20694435)
[»] chr5 (2 HSPs)
chr5 (127-253)||(18571090-18571219)
chr5 (8-74)||(33541810-33541876)
[»] chr7 (1 HSPs)
chr7 (171-253)||(3695672-3695754)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 235424 - 235193
Alignment:
Q  24 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatgattatgatcgtgcaaggattaac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  235424 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattgatgaagatgctgatgattatgatcgtgcaaggattaac 235325  T
Q  124 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctg 223  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  235324 gtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctg 235225  T
Q  224 cttcggatttgtgtgttcccaaagggaattta 255  Q
    ||||||||||||||||||||||||||||||||    
T  235224 cttcggatttgtgtgttcccaaagggaattta 235193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 8814256 - 8814496
Alignment:
Q  16 ggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatgattatgatcgtgcaa 115  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||  ||| ||| ||| ||||      | |||||||||||||||| |    
T  8814256 ggggatattaaattcctagtggagagcaagggtgatttgttgttagcagatgtttacaaccgtgatattgatga------ttatgattatgatcgtgcca 8814349  T
Q  116 ggatta---------acgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatg 206  Q
    |||||          || ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||| |   | ||    
T  8814350 ggattggcaggattgacatgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtg 8814449  T
Q  207 ttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  8814450 ttcattttctgcttctgctttggatttgtgtgttcccaaagggaatt 8814496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 251292 - 251516
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatgattatga 107  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||  | |  ||| ||  ||| | | |||||||  || |    
T  251292 ttggtggtggagatattaaattcttggtggagagcgacagtgatttgttgttagcagatgtttaccagcg-gaggtt--tgatgctcctgatgaacat-a 251387  T
Q  108 tcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgt 207  Q
    |     ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| |||||||||||||||| |||||||| | |||||||    
T  251388 t-----aaggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgt 251482  T
Q  208 tcgttttctgcttctgcttcggatttgtgtgttc 241  Q
    || ||||||| |||||| ||||||||||||||||    
T  251483 tcattttctgtttctgcatcggatttgtgtgttc 251516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 247085 - 246849
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagat-gctgatgattatg 106  Q
    |||||||||| |||||||||||||||||||||||| | |||||||||||||||  ||||||||| || |||  | || |||| ||| || ||||          
T  247085 ttggtggtggagatattaaattcttagtggagagcaagggtgatttgttgttaatagatgtttacgaacataggtttgatgatgatcgcggatg------ 246992  T
Q  107 atcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatg 206  Q
        || ||||||| || ||||||||||||||| || ||||||||| ||| |||||||||| |||||||| |||| |||||| |||||||| ||| | ||    
T  246991 ----tgtaaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctg 246896  T
Q  207 ttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
     || |||||||||||||||| |||||||||||||| |||||||||||    
T  246895 gtcattttctgcttctgctttggatttgtgtgttcacaaagggaatt 246849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 231692 - 231557
Alignment:
Q  124 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctg 223  Q
    ||||||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||| |||||| |||||||| |  |||||||| |||||||||||||    
T  231692 gtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctg 231593  T
Q  224 cttc------ggatttgtgtgttcccaaagggaatt 253  Q
    ||||      |||||| |||||||| ||||||||||    
T  231592 cttctgctttggatttatgtgttccaaaagggaatt 231557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 4439891 - 4439842
Alignment:
Q  204 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  4439891 atgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaatt 4439842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 18991235 - 18991186
Alignment:
Q  204 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||||||||||||||||||||| ||||| | ||||  |||||||||||    
T  18991235 atgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaatt 18991186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 253
Target Start/End: Complemental strand, 7041606 - 7041478
Alignment:
Q  125 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgc 224  Q
    ||||||| |||||||| ||||||||||||||| |||||||| | | |||||||||||| ||||| |||||||||    |||||||||| |||| ||||||    
T  7041606 tgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgtttctgc 7041507  T
Q  225 ttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||||||||| ||| ||||||||||||    
T  7041506 ttcggatttgtgcgttgccaaagggaatt 7041478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 7025887 - 7025732
Alignment:
Q  104 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc------ttggg 197  Q
    ||||| ||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | |||||| ||||| ||||| |||      |||||    
T  7025887 atgattgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggg 7025788  T
Q  198 attgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
     ||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  7025787 gttggtatgttcgttttctgcttgtgcttcagatttgtgtgttgccaaagggaatt 7025732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 125 - 253
Target Start/End: Complemental strand, 7046949 - 7046821
Alignment:
Q  125 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgc 224  Q
    |||||||||||||||| ||||||||||||||| |||||||  | | ||||||||||| |||||| ||||||||  |   |||||||||||||||||||      
T  7046949 tgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttcttt 7046850  T
Q  225 ttcggatttgtgtgttcccaaagggaatt 253  Q
    ||| ||||||| |||| ||||||||||||    
T  7046849 ttcagatttgtatgttgccaaagggaatt 7046821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 7013053 - 7012796
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga----ccatgagat--tcatgaagatgctgatga 101  Q
    ||||||| ||||| || |||||||||||||||||||| |  ||||||||||||||||||||||||||    |  ||   |  || |  |||| |||||      
T  7013053 ttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatgattgtctttgtactgatcttttagatcctgatct 7012954  T
Q  102 ttatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc------ttg 195  Q
    | | |||| || ||| ||| |  |||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||||  |||| |||      |||    
T  7012953 taaagatcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttg 7012854  T
Q  196 ggattgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    || ||| |||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  7012853 gggttggtatgttcgttttctgcctgtgcttcggatttgtgtgttgccaaagggaatt 7012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 9159480 - 9159635
Alignment:
Q  104 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgc- 202  Q
    |||||| || ||||||| |  ||||||||||||| || ||||||||||||||| |||| ||  | | |||||||||||| ||||| |||||||| |||      
T  9159480 atgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggg 9159579  T
Q  203 -----tatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
         ||| ||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  9159580 gttggtatattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaatt 9159635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 7029944 - 7029851
Alignment:
Q  104 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 197  Q
    ||||||||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | ||| |||||||| ||||| ||||||||    
T  7029944 atgatcgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggg 7029851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 212987 - 213036
Alignment:
Q  25 aaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 74  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  212987 aaattcttagtggagagcgagggtgatttgttgttagtagatgtttatga 213036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 9171035 - 9170793
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattcatgaagatgctgatgattatga 107  Q
    ||||||||||| | || |||||||||||||||||||| || |||||||||||||| || ||||||||   ||   ||        |  ||||  | ||||    
T  9171035 ttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatga--ttgtcttt-------gtattgatcttaatga 9170945  T
Q  108 tcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttc------ttgggattg 201  Q
    || || ||||||| |  |||||||||||||||| ||||||||||||||| |||| ||  | | |||||||||||| ||||| |||      ||||| |||    
T  9170944 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttg 9170845  T
Q  202 ctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
     ||| ||||||||||| ||||||||| |||||||||||| || |||||||||    
T  9170844 gtatattcgttttctgtttctgcttcagatttgtgtgtttcccaagggaatt 9170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 7030046 - 7029980
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 74  Q
    ||||||||||  || | |||||||||||||||||||| || |||||||||||||| |||||||||||    
T  7030046 ttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgtttatga 7029980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 7025981 - 7025925
Alignment:
Q  16 ggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttat 72  Q
    ||||| || |||||||||||||||||||| || |||||||||||||| |||||||||    
T  7025981 ggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgtttat 7025925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 9159393 - 9159445
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtta 60  Q
    ||||||||||| | || |||||||||||||||||||| || ||||||||||||    
T  9159393 ttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgtta 9159445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 9343956 - 9343838
Alignment:
Q  124 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttct 222  Q
    |||||||||||| |||| | ||||||||||||| |||||||  ||| |||||||||||| ||||| |||||||| | ||  |||||||||||||||||||    
T  9343956 gtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatga-atgttcgttttctgcttct 9343858  T
Q  223 gcttcggatttgtgtgttcc 242  Q
    ||||||||||||||||||||    
T  9343857 gcttcggatttgtgtgttcc 9343838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 9448425 - 9448307
Alignment:
Q  124 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttctt-gggattgctatgttcgttttctgcttct 222  Q
    |||||||||||| |||| ||||||||||| ||| |||||||  ||| |||||||||||| ||||| ||||| |||| ||   ||||||||||||||||||    
T  9448425 gtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatg-actgttcgttttctgcttct 9448327  T
Q  223 gcttcggatttgtgtgttcc 242  Q
    ||||||||||||||| ||||    
T  9448326 gcttcggatttgtgtcttcc 9448307  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 41985726 - 41985610
Alignment:
Q  137 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcggatttgt 235  Q
    |||| ||||||||||| ||| | |||||||| | |||||||||||||||||| |||||||| | ||  ||||||||||||||||||||||||||||||||    
T  41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg-atgttcgttttctgcttctgcttcggatttgt 41985628  T
Q  236 gtgttcccaaagggaatt 253  Q
     ||||  |||||| ||||    
T  41985627 ctgttgtcaaaggaaatt 41985610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 9617489 - 9617597
Alignment:
Q  145 gagaagaagtggctgaagttggcaaatttaggggatagagttttcttc-ttgggattgctatgttcgttttctgcttctgcttcggatttgtgtgttccc 243  Q
    |||||||| ||| ||||||||  ||||||||||||||| ||||| ||| ||| || ||  |||||| ||||||||||||||||| |||||||||||| ||    
T  9617489 gagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatgg-atgttcattttctgcttctgcttcagatttgtgtgtttcc 9617587  T
Q  244 aaagggaatt 253  Q
    ||||||||||    
T  9617588 aaagggaatt 9617597  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 9655375 - 9655491
Alignment:
Q  137 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgcttcggatttgtg 236  Q
    |||| ||||||||||| ||| ||||||||   |||||||||||||| ||||| || |||||      ||||||||||||||| || ||||||||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9655474  T
Q  237 tgttcccaaagggaatt 253  Q
    |||| ||||||||||||    
T  9655475 tgtttccaaagggaatt 9655491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 9494719 - 9494784
Alignment:
Q  9 tggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 74  Q
    |||||| ||||| || ||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  9494719 tggtgggggggacatcaaattcttagtcgagagtgacggtgatttgttgttagtagatgtttatga 9494784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 9646382 - 9646498
Alignment:
Q  137 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgcttcggatttgtg 236  Q
    |||| ||||||||||| ||| ||||||||   |||||||||||||| ||||| || || ||      ||||||||||||||| || ||||||||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9646481  T
Q  237 tgttcccaaagggaatt 253  Q
    |||| ||||||||||||    
T  9646482 tgtttccaaagggaatt 9646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 9494860 - 9494942
Alignment:
Q  171 tttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||||||||| ||||| |||||||| | ||  |||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  9494860 tttaggggatagggttttgttcttggggaatgg-atgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaatt 9494942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 9407397 - 9407348
Alignment:
Q  204 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  9407397 atgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaatt 9407348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 9425604 - 9425555
Alignment:
Q  204 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  9425604 atgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaatt 9425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 9353009 - 9352883
Alignment:
Q  127 tttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgct 225  Q
    ||||||||| |||| | ||||||||||||| ||||||||  ||| ||||||| ||| ||||| ||  |||| | ||  |||||||||||||||||||| |    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtgg-atgttcgttttctgcttctggt 9352911  T
Q  226 tcggatttgtgtgttcccaaagggaatt 253  Q
    | |||| ||||| |||||||||| ||||    
T  9352910 tgggatctgtgtcttcccaaaggaaatt 9352883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 9626572 - 9626614
Alignment:
Q  211 ttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  9626572 ttttctgcatcagcttcggatttgtgtgtttccaaagggaatt 9626614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 16011768 - 16011802
Alignment:
Q  205 tgttcgttttctgcttctgcttcggatttgtgtgt 239  Q
    |||||||||||||||||||||||||||||| ||||    
T  16011768 tgttcgttttctgcttctgcttcggatttgggtgt 16011802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 9377117 - 9377068
Alignment:
Q  204 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||||||| |||||||||||| |||| ||||| |||||||||| ||||    
T  9377117 atgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaatt 9377068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 9397816 - 9397767
Alignment:
Q  204 atgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||| ||||| ||||| |||| ||||||||||||| ||||||||||||    
T  9397816 atgttcattttccgcttcagctttggatttgtgtgttgccaaagggaatt 9397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 9695629 - 9695694
Alignment:
Q  132 gcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 197  Q
    |||| |||| ||||||||||||||| | |||||| | |||||||||||||| ||||| || |||||    
T  9695629 gcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttggg 9695694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 41980944 - 41980836
Alignment:
Q  145 gagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcggatttgtgtgttccc 243  Q
    |||||||| ||| | |||||| | | |||||||||||||||||| |||||||| | ||  ||||||||||| ||||||||||||  |||||| ||||  |    
T  41980944 gagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatgg-atgttcgttttttgcttctgcttcaaatttgtctgttgtc 41980846  T
Q  244 aaagggaatt 253  Q
    ||||| ||||    
T  41980845 aaaggaaatt 41980836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 20694314 - 20694435
Alignment:
Q  132 gcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgcttcgga 230  Q
    |||| |||||||||||||||| ||| |||  ||| ||| ||| |||||||| ||||| || ||||| | ||  |||||||||||||||||||||||||||    
T  20694314 gcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatgg-atgttcgttttctgcttctgcttcgga 20694412  T
Q  231 tttgtgtgttcccaaagggaatt 253  Q
    |||||||||| ||||||||||||    
T  20694413 tttgtgtgttgccaaagggaatt 20694435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 18571219 - 18571090
Alignment:
Q  127 tttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagtt---ttcttcttgggattgctatgttcgttttctgcttctg 223  Q
    ||||||||| |||| ||||||||||||||| |||| ||| | | ||||||||||| ||||   || ||||| ||  ||  | |||| ||||||  |||||    
T  18571219 tttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctg 18571120  T
Q  224 cttcggatttgtgtgttcccaaagggaatt 253  Q
    ||||||||||||||||| ||||||||||||    
T  18571119 cttcggatttgtgtgtttccaaagggaatt 18571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 33541876 - 33541810
Alignment:
Q  8 ttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatga 74  Q
    |||||||||| ||  | |||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  33541876 ttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatga 33541810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 3695754 - 3695672
Alignment:
Q  171 tttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgcttcggatttgtgtgttcccaaagggaatt 253  Q
    |||||||||||||||||| ||||| ||  |  ||||||| |||||||||  |||||||||||||| || | ||||||||||||    
T  3695754 tttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggatttgtctgctgccaaagggaatt 3695672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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