View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7082_low_5 (Length: 442)

Name: NF7082_low_5
Description: NF7082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7082_low_5
NF7082_low_5
[»] chr4 (5 HSPs)
chr4 (1-434)||(36246246-36246679)
chr4 (293-336)||(52071519-52071562)
chr4 (294-339)||(27808566-27808611)
chr4 (300-369)||(31941926-31941995)
chr4 (300-369)||(32000885-32000954)
[»] chr2 (3 HSPs)
chr2 (268-386)||(2892226-2892344)
chr2 (268-394)||(37881267-37881393)
chr2 (1-110)||(2892440-2892549)
[»] chr3 (1 HSPs)
chr3 (294-342)||(44674752-44674800)
[»] chr8 (3 HSPs)
chr8 (299-342)||(39916909-39916952)
chr8 (292-375)||(11747427-11747510)
chr8 (293-333)||(7195699-7195739)
[»] chr1 (3 HSPs)
chr1 (289-332)||(27632581-27632624)
chr1 (293-336)||(45594286-45594329)
chr1 (294-332)||(17118247-17118285)
[»] chr5 (1 HSPs)
chr5 (299-336)||(19221386-19221423)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 36246246 - 36246679
Alignment:
Q  1 gtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttgg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246246 gtcgtctacgttggacaaactatctccgaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttgg 36246345  T
Q  101 caacaagtaataataattaagtctctcagtatataaattttaatcaatttatctacatgtgtaacagtgagttaaatacatattaattttcattatgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36246346 caacaagtaataataattaagtctctcagtatataaattttaatcaatttatctacatgtgtaacaatgagttaaatacatattaattttcattatgatt 36246445  T
Q  201 aagatactatatacgacagaataatagatatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggctaccagg 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246446 aagacactatatacgacagaataatagatatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggctaccagg 36246545  T
Q  301 aagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcctgtaacacataatccacgttttgat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36246546 aagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcctgtgacacataatccacgttttgat 36246645  T
Q  401 cttttggacctatcttctatcctaaattcatctc 434  Q
    ||||||||||||||||||||||||||||||||||    
T  36246646 cttttggacctatcttctatcctaaattcatctc 36246679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 336
Target Start/End: Complemental strand, 52071562 - 52071519
Alignment:
Q  293 ctaccaggaagaacagacaatgaaatcaagaattattggaacac 336  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  52071562 ctaccagggcgaacagacaatgaaatcaagaattattggaacac 52071519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 27808566 - 27808611
Alignment:
Q  294 taccaggaagaacagacaatgaaatcaagaattattggaacactca 339  Q
    |||||||||||||||| ||||| || ||||||||||||||||||||    
T  27808566 taccaggaagaacagataatgagataaagaattattggaacactca 27808611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 31941926 - 31941995
Alignment:
Q  300 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 369  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  31941926 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 31941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 32000885 - 32000954
Alignment:
Q  300 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 369  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  32000885 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 32000954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 2892344 - 2892226
Alignment:
Q  268 taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatggga 367  Q
    |||||||||| ||||||| ||| |  |||||||||| || ||||||||||| || || ||||||||||| |||||||||||||| || || |||||||||    
T  2892344 taggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatggga 2892245  T
Q  368 attgatcctgtaacacata 386  Q
    |||||||| ||||||||||    
T  2892244 attgatccagtaacacata 2892226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 394
Target Start/End: Complemental strand, 37881393 - 37881267
Alignment:
Q  268 taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatggga 367  Q
    |||||||||| | || ||| ||||  |||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||  |  |||  |||    
T  37881393 taggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagactacttcgaagtgga 37881294  T
Q  368 attgatcctgtaacacataatccacgt 394  Q
    ||||||||||| || |||| |||||||    
T  37881293 attgatcctgttactcatactccacgt 37881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2892549 - 2892440
Alignment:
Q  1 gtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttgg 100  Q
    ||||||| ||||||||||||||||||| ||| ||||||||  | || || || || |||||||| ||||| || || |||||||| |||||||| |||||    
T  2892549 gtcgtctccgttggacaaactatctccgaccagatataaaacgtggtcggttttcatttgaagaggaagagacaattattcagctacatagcattcttgg 2892450  T
Q  101 caacaagtaa 110  Q
    ||||||||||    
T  2892449 caacaagtaa 2892440  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 44674752 - 44674800
Alignment:
Q  294 taccaggaagaacagacaatgaaatcaagaattattggaacactcacat 342  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  44674752 taccaggaagaacagataatgagatcaagaattactggaacactcacat 44674800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 39916909 - 39916952
Alignment:
Q  299 ggaagaacagacaatgaaatcaagaattattggaacactcacat 342  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  39916909 ggaagaacagacaatgagatcaagaactattggaacactcacat 39916952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 11747427 - 11747510
Alignment:
Q  292 gctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcc 375  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||| ||| | | |||| | ||| || | ||||||||||||||    
T  11747427 gctaccaggaagaactgacaatgagatcaagaatttatggaacacacacttaaagaaacgtctcatatgcatgggaattgatcc 11747510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 7195699 - 7195739
Alignment:
Q  293 ctaccaggaagaacagacaatgaaatcaagaattattggaa 333  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  7195699 ctaccaggacgaacagacaatgaaatcaagaactactggaa 7195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 27632624 - 27632581
Alignment:
Q  289 taggctaccaggaagaacagacaatgaaatcaagaattattgga 332  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  27632624 taggcttccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 336
Target Start/End: Complemental strand, 45594329 - 45594286
Alignment:
Q  293 ctaccaggaagaacagacaatgaaatcaagaattattggaacac 336  Q
    ||||||||||||||||||||||| || ||||| |||||||||||    
T  45594329 ctaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 17118285 - 17118247
Alignment:
Q  294 taccaggaagaacagacaatgaaatcaagaattattgga 332  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  17118285 taccaggaagaacagacaatgaaataaagaattactgga 17118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 19221386 - 19221423
Alignment:
Q  299 ggaagaacagacaatgaaatcaagaattattggaacac 336  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  19221386 ggaagaacagacaatgaaataaagaatcattggaacac 19221423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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