View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7082_low_6 (Length: 426)

Name: NF7082_low_6
Description: NF7082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7082_low_6
NF7082_low_6
[»] chr4 (5 HSPs)
chr4 (18-404)||(1552268-1552657)
chr4 (41-402)||(1547446-1547827)
chr4 (333-379)||(2460597-2460643)
chr4 (333-385)||(6007665-6007717)
chr4 (266-320)||(553925-553979)
[»] chr6 (8 HSPs)
chr6 (336-397)||(7993303-7993364)
chr6 (336-399)||(6593683-6593746)
chr6 (263-320)||(7132471-7132528)
chr6 (263-320)||(7135394-7135451)
chr6 (338-379)||(28935578-28935619)
chr6 (336-376)||(6403834-6403874)
chr6 (104-136)||(6417087-6417119)
chr6 (343-379)||(6437159-6437195)
[»] chr5 (2 HSPs)
chr5 (336-405)||(17205959-17206028)
chr5 (333-379)||(32268770-32268816)
[»] chr8 (2 HSPs)
chr8 (335-385)||(32152208-32152258)
chr8 (104-138)||(17642962-17642996)
[»] chr3 (3 HSPs)
chr3 (333-387)||(51120417-51120471)
chr3 (333-381)||(51112970-51113018)
chr3 (336-376)||(51763168-51763208)
[»] chr7 (3 HSPs)
chr7 (353-397)||(10168807-10168851)
chr7 (353-397)||(10176332-10176376)
chr7 (104-138)||(10615708-10615742)
[»] chr1 (1 HSPs)
chr1 (336-379)||(15837976-15838019)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 1552657 - 1552268
Alignment:
Q  18 gttctcgcaatatatggg-taactagttcttcaagaaaagggaaacaatcggcaatgatcaacatgtcactgctttggggaccgtaaatgtgggaacacg 116  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1552657 gttcttgcaatatatggggtaactagttcttcaagaaaagggaaacaatcggcaatgatcaacatggcactgctttggggaccgtaaatgtgggaacacg 1552558  T
Q  117 tgagagaggtcaaagttgtaatgtaatgttttaggagaaatcttttaacccatctatgggaattttgtctctgtcggagacattgagcgatttgaggttt 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1552557 tgagagaggtcaaagttgtaatgtaatgttttgggagaaatcttttaacccatctatggtaattttgtctctgtcggagacattgagcgatttgaggttt 1552458  T
Q  217 gatgagaaacaagaggttgtcaaggcgacctttgtagcacgaaaaatcaagggagttgaggttggagaaccttttgaaaaggcggcgaaggaaagggcgt 316  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  1552457 gatgagaaacgagaggttgtcaaggcgacctttgtagcacgaaaaatcaagggagttgaggttggagaaccttttgaaaaggtggcggaggaaagggcgt 1552358  T
Q  317 gttggcttccaaacac--agagagaatcggagacggtcggtgatagagaggaactgtttggagacaagggataaagacttcaaatagcga 404  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1552357 gttggcttccaaacactgagagagaatcggagacggtcggtgatagaggggaactgtttggagacgagggataaagacttcaaatagcga 1552268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 41 - 402
Target Start/End: Complemental strand, 1547827 - 1547446
Alignment:
Q  41 agttcttcaagaaaagggaaacaatcggcaatgatcaacatgtcactgctttggggaccgtaaatgtgggaacacgtgagagaggtcaaagttgtaatgt 140  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||    
T  1547827 agttcttcgagaaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaagttgtaatgt 1547728  T
Q  141 aatgttttaggagaaatcttttaacccatctatgggaattttgtctctgtcggagacattgag---------cgatttgaggtttgatgagaaacaagag 231  Q
         ||| |||||| ||||||||||||   |||||||||     ||| | ||||||||||||         ||||||||||||||||||| ||| ||||    
T  1547727 -----tttgggagaattcttttaacccaatcatgggaattccacgtctctaggagacattgagtgatttgagcgatttgaggtttgatgaggaacgagag 1547633  T
Q  232 gtt--------------gtcaaggcgacctttgtagcacgaaaaatcaagggagttgaggttggagaaccttttgaaaaggcggcgaaggaaagggcgtg 317  Q
    |||              ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||    
T  1547632 gtttgccagagaagaaagtcaaggcgacctttgtagcacgaaaaatcaagcgagttgaggttggagaaccttttgaagaggcgctgaaggaaagggcgtg 1547533  T
Q  318 ttggcttccaaaca--cagagagaatcggagacggtcggtgatagagaggaactgtttggagacaagggataaagacttcaaatagc 402  Q
    ||||||||||||||   ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||| ||||    
T  1547532 ttggcttccaaacattgagagagaatcggagacggttggtgatggagaggaattgtttggagacaagggataatgacttcaagtagc 1547446  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 2460597 - 2460643
Alignment:
Q  333 agagagaatcggagacggtcggtgatagagaggaactgtttggagac 379  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagac 2460643  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 6007665 - 6007717
Alignment:
Q  333 agagagaatcggagacggtcggtgatagagaggaactgtttggagacaaggga 385  Q
    |||||||||||||||| || |||||| |||||||||||||| ||||| |||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgaggga 6007717  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 553925 - 553979
Alignment:
Q  266 agggagttgaggttggagaaccttttgaaaaggcggcgaaggaaagggcgtgttg 320  Q
    |||||| ||||||||| |||||||| |||||||||  |||| |||||||||||||    
T  553925 agggaggtgaggttggtgaacctttggaaaaggcgaggaagtaaagggcgtgttg 553979  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 7993364 - 7993303
Alignment:
Q  336 gagaatcggagacggtcggtgatagagaggaactgtttggagacaagggataaagacttcaa 397  Q
    |||||||||||||||  |||||| |||||||||||||||||||| || |||||||| |||||    
T  7993364 gagaatcggagacggctggtgatggagaggaactgtttggagacgagagataaagaattcaa 7993303  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 6593746 - 6593683
Alignment:
Q  336 gagaatcggagacggtcggtgatagagaggaactgtttggagacaagggataaagacttcaaat 399  Q
    |||||||||||||||||  |||||||||  ||||||||||| || ||||||| ||| |||||||    
T  6593746 gagaatcggagacggtcaatgatagagaaaaactgtttggatacgagggatagagaattcaaat 6593683  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 7132471 - 7132528
Alignment:
Q  263 tcaagggagttgaggttggagaaccttttgaaaaggcggcgaaggaaagggcgtgttg 320  Q
    ||||||||||||||||||| |||||||||||  ||||| |  |||||||||| |||||    
T  7132471 tcaagggagttgaggttggtgaaccttttgaggaggcgaccgaggaaagggcctgttg 7132528  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 7135394 - 7135451
Alignment:
Q  263 tcaagggagttgaggttggagaaccttttgaaaaggcggcgaaggaaagggcgtgttg 320  Q
    ||||||||||||||||||| |||||||||||  ||||| |  |||||||||| |||||    
T  7135394 tcaagggagttgaggttggtgaaccttttgaggaggcgaccgaggaaagggcctgttg 7135451  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 28935578 - 28935619
Alignment:
Q  338 gaatcggagacggtcggtgatagagaggaactgtttggagac 379  Q
    ||||||||||| || ||||||||||||||||||||| |||||    
T  28935578 gaatcggagactgttggtgatagagaggaactgtttcgagac 28935619  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 6403834 - 6403874
Alignment:
Q  336 gagaatcggagacggtcggtgatagagaggaactgtttgga 376  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  6403834 gagactcggatacggttggtgatagagaggaactgtttgga 6403874  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 6417087 - 6417119
Alignment:
Q  104 atgtgggaacacgtgagagaggtcaaagttgta 136  Q
    ||||||||||| |||||||||||||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgta 6417119  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 6437159 - 6437195
Alignment:
Q  343 ggagacggtcggtgatagagaggaactgtttggagac 379  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  6437159 ggagacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 17205959 - 17206028
Alignment:
Q  336 gagaatcggagacggtcggtgatagagaggaactgtttggagacaagggataaagacttcaaatagcgac 405  Q
    |||||||||| || ||||||||||||||| |||||||||||||| ||||||| ||| || || |||||||    
T  17205959 gagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagagaatttaagtagcgac 17206028  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 32268770 - 32268816
Alignment:
Q  333 agagagaatcggagacggtcggtgatagagaggaactgtttggagac 379  Q
    ||||||||||| ||||||| |||||| ||||| ||||||||||||||    
T  32268770 agagagaatcgaagacggttggtgatggagagtaactgtttggagac 32268816  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 32152208 - 32152258
Alignment:
Q  335 agagaatcggagacggtcggtgatagagaggaactgtttggagacaaggga 385  Q
    |||||||||||||| || |||||| |||||||||||||||||||| |||||    
T  32152208 agagaatcggagactgttggtgatggagaggaactgtttggagacgaggga 32152258  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 17642996 - 17642962
Alignment:
Q  104 atgtgggaacacgtgagagaggtcaaagttgtaat 138  Q
    ||||||||||| |||||||||||||||||||||||    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaat 17642962  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 51120471 - 51120417
Alignment:
Q  333 agagagaatcggagacggtcggtgatagagaggaactgtttggagacaagggata 387  Q
    ||||||||||||||| ||| |||||||||||||||||| || ||||||| |||||    
T  51120471 agagagaatcggagaaggttggtgatagagaggaactgcttcgagacaacggata 51120417  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 51113018 - 51112970
Alignment:
Q  333 agagagaatcggagacggtcggtgatagagaggaactgtttggagacaa 381  Q
    ||||||||||||||||||| |||||| ||||||||| |||| |||||||    
T  51113018 agagagaatcggagacggttggtgatggagaggaaccgtttcgagacaa 51112970  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 51763208 - 51763168
Alignment:
Q  336 gagaatcggagacggtcggtgatagagaggaactgtttgga 376  Q
    |||||||||| ||||| |||||| |||||||||||||||||    
T  51763208 gagaatcggaaacggtgggtgatggagaggaactgtttgga 51763168  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 10168851 - 10168807
Alignment:
Q  353 ggtgatagagaggaactgtttggagacaagggataaagacttcaa 397  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||    
T  10168851 ggtgatggagaggaactgtttggagacaagggatagagaattcaa 10168807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 10176376 - 10176332
Alignment:
Q  353 ggtgatagagaggaactgtttggagacaagggataaagacttcaa 397  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||    
T  10176376 ggtgatggagaggaactgtttggagacaagggatagagaattcaa 10176332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 10615708 - 10615742
Alignment:
Q  104 atgtgggaacacgtgagagaggtcaaagttgtaat 138  Q
    ||||||||||| |||||||||||||||||||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaat 10615742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 15838019 - 15837976
Alignment:
Q  336 gagaatcggagacggtcggtgatagagaggaactgtttggagac 379  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||    
T  15838019 gagaatcggagacggttggtgatggagagaaactgtttggagac 15837976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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