View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7083_high_1 (Length: 498)
Name: NF7083_high_1
Description: NF7083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7083_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 6650510 - 6650041
Alignment:
| Q |
1 |
ttagtgacatggttacttcttctccttataacattgtcattagttcctgcggcattgtgttctgtgtgttcacgtcatttgctttctaaaccacttatag |
100 |
Q |
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| T |
6650510 |
ttagtgacatggttacttcttctccttgtaacattgtcattagttcctgcggcattgtgttctgtgtgttcacgtcatttgctttctaaaccacttatag |
6650411 |
T |
|
| Q |
101 |
gagatgacggaagaatctatgtttgttctgataaaacctttttgtcatttgaaaccaatggtaccattgcttggtctattcatgttgactataaatgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6650410 |
gagatgacggaagaatctatgtttgttctgataaaacctttttgtcatttgaaaccaatggtaccattgcttggtctattcatgttgactataaatgtaa |
6650311 |
T |
|
| Q |
201 |
tgttgggttggctcctgttcatgctggtcttggaaaggtgagttgttttttaatgaaagtattttaggtttgaatttggtggtagtgttgtagatttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6650310 |
tgttgggttggctcctgttcatgctggtcttggaaaggtgagttgttttttaatgaaattattttaggtttgaatttggtggtagtgttgtagatttatt |
6650211 |
T |
|
| Q |
301 |
catcaattcatgttgattatgtaaaattctcctgaattgtagccaccctgcaatttgttatactttcgctaaccctttagatttatgcatgtccggtgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6650210 |
catcaattcatgttgattatgtaaaattctcctgaattgtagccaccctgcaatttgttata------------ctttagatttatgcatgtccggtgtc |
6650123 |
T |
|
| Q |
401 |
tgacatgcgttagtgttgaaaaccgacacatgcgattacattctattgcttctatttttaaaattattaccggtgttgatgt |
482 |
Q |
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||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6650122 |
tgacatgtgttagtgttgaacacctacacatgtgattacattctattgcttctatttttaaaattattaccggtgttgatgt |
6650041 |
T |
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