View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7083_high_5 (Length: 387)
Name: NF7083_high_5
Description: NF7083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7083_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 36607417 - 36607064
Alignment:
| Q |
19 |
cttcacctcctgctccagatgctgcttttaagagagcagccaaagtagcagtatcaaagagctccttgctatctccttcatcatcagattccacttcctc |
118 |
Q |
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| T |
36607417 |
cttcacctcctgctccagatgctgcttttaagagagcagccaaagtagcagtatcaaagagctccttgctatctccttcatcatcagattccacttcctc |
36607318 |
T |
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| Q |
119 |
atctgagtcagttacaatctggccatcaattctgtcatcctgtgaactctcacttgccctaatttgcttctccaattcctccaagtatttattagcagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607317 |
atctgagtcagttacaatctggccatcaattctgtcatcctgtgaactctcacttgccctaatttgcttctccaattcctccaagtatttattagcagaa |
36607218 |
T |
|
| Q |
219 |
tcggagcctccaaagatcattgattcatccttcgtatccgacaccgagtcatcaatctctctgtcaacgtgatgatcaacagcagcctcaacatggctgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607217 |
tcggagcctccaaagatcattgattcatccttcgtatccgacaccgagtcatcaatctctctgtcaacgtgatgatcaacagcagcctcaacatggctgc |
36607118 |
T |
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| Q |
319 |
catcatccacctcgataacacgatcaacattgctctcagcctccccctcaacag |
372 |
Q |
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| T |
36607117 |
catcatccacctcgataacacgatcaacattgctctcagcctccccctcaacag |
36607064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 36607058 - 36606992
Alignment:
| Q |
306 |
tcaacatggctgccatcatccacctcgataacacgatcaacattgctctcagcctccccctcaacag |
372 |
Q |
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| T |
36607058 |
tcaacatggctcccatcttccacctcaacaacacggtcaacattgctctccgcttcctcctcaacag |
36606992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 36606998 - 36606937
Alignment:
| Q |
294 |
tcaacagcagcctcaacatggctgccatcatccacctcgataacacgatcaacattgctctc |
355 |
Q |
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|||||||||| ||||||||||| |||| |||||||| | ||||||||||||||| ||||| |
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| T |
36606998 |
tcaacagcagtatcaacatggctctcatcttccacctcaacaacacgatcaacattactctc |
36606937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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