View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7083_low_10 (Length: 249)

Name: NF7083_low_10
Description: NF7083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7083_low_10
NF7083_low_10
[»] chr3 (10 HSPs)
chr3 (6-175)||(23922825-23923015)
chr3 (180-233)||(25132772-25132825)
chr3 (188-233)||(18649920-18649965)
chr3 (177-233)||(1709771-1709827)
chr3 (189-233)||(35502942-35502986)
chr3 (190-232)||(45968018-45968060)
chr3 (180-229)||(20367216-20367265)
chr3 (177-222)||(20797787-20797831)
chr3 (188-229)||(25844735-25844775)
chr3 (180-233)||(30407057-30407110)
[»] chr7 (10 HSPs)
chr7 (175-232)||(9095708-9095765)
chr7 (188-233)||(34236230-34236275)
chr7 (188-233)||(14316450-14316495)
chr7 (188-233)||(29375745-29375790)
chr7 (188-233)||(38153672-38153717)
chr7 (188-233)||(16559099-16559144)
chr7 (188-233)||(16606518-16606563)
chr7 (191-232)||(34792109-34792150)
chr7 (177-232)||(27544034-27544088)
chr7 (178-233)||(40681703-40681758)
[»] chr4 (11 HSPs)
chr4 (188-233)||(40434148-40434193)
chr4 (188-232)||(19845554-19845598)
chr4 (177-232)||(11772916-11772971)
chr4 (188-234)||(25131477-25131523)
chr4 (188-233)||(5726150-5726195)
chr4 (192-233)||(29969587-29969628)
chr4 (178-233)||(296294-296349)
chr4 (180-229)||(7319692-7319742)
chr4 (175-220)||(7447440-7447485)
chr4 (188-233)||(20509401-20509446)
chr4 (189-233)||(5633865-5633909)
[»] chr5 (8 HSPs)
chr5 (177-231)||(23878003-23878057)
chr5 (188-233)||(8249516-8249561)
chr5 (188-233)||(30723557-30723602)
chr5 (188-233)||(12832548-12832593)
chr5 (188-233)||(12864523-12864568)
chr5 (188-233)||(25325137-25325182)
chr5 (190-233)||(22935617-22935660)
chr5 (85-132)||(42456172-42456219)
[»] chr8 (4 HSPs)
chr8 (188-233)||(460131-460176)
chr8 (188-233)||(16839306-16839351)
chr8 (190-233)||(43775263-43775306)
chr8 (175-220)||(17858171-17858216)
[»] chr2 (7 HSPs)
chr2 (188-233)||(20947115-20947160)
chr2 (177-233)||(12807569-12807625)
chr2 (184-232)||(16315193-16315241)
chr2 (193-233)||(21579694-21579734)
chr2 (180-232)||(10289487-10289539)
chr2 (175-233)||(39529635-39529693)
chr2 (196-233)||(30504748-30504785)
[»] chr6 (9 HSPs)
chr6 (188-233)||(34600932-34600977)
chr6 (188-233)||(34627477-34627522)
chr6 (192-233)||(10304208-10304249)
chr6 (188-233)||(32197863-32197908)
chr6 (188-233)||(34722209-34722254)
chr6 (179-226)||(14362911-14362958)
chr6 (188-226)||(12687195-12687233)
chr6 (188-233)||(2540620-2540665)
chr6 (180-232)||(24573783-24573835)
[»] chr1 (8 HSPs)
chr1 (188-233)||(27364801-27364846)
chr1 (189-233)||(44890112-44890156)
chr1 (188-230)||(36099609-36099651)
chr1 (189-233)||(29644404-29644447)
chr1 (189-233)||(51799562-51799606)
chr1 (190-233)||(42475327-42475370)
chr1 (189-233)||(3927624-3927669)
chr1 (188-233)||(25393364-25393409)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 23923015 - 23922825
Alignment:
Q  6 tttcattaagtcgcattgacaagttccttttgtctgaaaattggtatttcaattggccaatttgggtcagat-----------------ataagcagatg 88  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||                 || ||||||||    
T  23923015 tttcattaagtcgcattgacaggttccttttgtctgaaaattggtgtttcaattggccaattggggtcagatcattgtgcaattgttctatcagcagatg 23922916  T
Q  89 agcagaattggggtctcaaaccgtt----tcgtatgttgaaatgttggaaagaggttcatgaatataagaattttgttagttctaaatggc 175  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23922915 agcagaattggggtctcaaaccgttcgtttcgtatgttgaaatgttggaaagaggttcctgaatataagaattttgttagttctaaatggc 23922825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 25132825 - 25132772
Alignment:
Q  180 tgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||| |||||||||||||||||| || ||||||||||||| |||||||||    
T  25132825 tgtttggacaaggaggttggtggtttggggctaaggagaattagagagtttaat 25132772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 18649920 - 18649965
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  18649920 taaggaggttggtggtttgcgggtatggagaattaaggagtttaat 18649965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 1709771 - 1709827
Alignment:
Q  177 atttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||| |||||||||||||||||||||| |  ||||||| |||||| |||||||||    
T  1709771 atttgtgtggataaggaggttggtggtttaaaagtaaggaaaattagagagtttaat 1709827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 35502942 - 35502986
Alignment:
Q  189 aaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||    
T  35502942 aaggaggttggcggtctgggggtaaggagaattagggagtttaat 35502986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 45968060 - 45968018
Alignment:
Q  190 aggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    ||||||||||| ||||| || ||||||||||||||||||||||    
T  45968060 aggaggttggtagtttggggataaggagaattagggagtttaa 45968018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 20367265 - 20367216
Alignment:
Q  180 tgtttggataaggaggttggtggtttgagggtaaggagaattagggagtt 229  Q
    |||||||||||||| ||| | |||||| ||||||||||||| ||||||||    
T  20367265 tgtttggataaggaagttagaggtttgggggtaaggagaatgagggagtt 20367216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 20797831 - 20797787
Alignment:
Q  177 atttgtttggataaggaggttggtggtttgagggtaaggagaatta 222  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||    
T  20797831 atttgtgtggataaggaggttggtggttt-agggtaaggagtatta 20797787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 25844735 - 25844775
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtt 229  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  25844735 taaggaggttggtggtttg-gggtaatgagaattagggagtt 25844775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 30407110 - 30407057
Alignment:
Q  180 tgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||| |||| |||||  ||| ||||||||| ||||||||||||    
T  30407110 tgtttggataaggagattggcggtttaggggcaaggagaatgagggagtttaat 30407057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 9095765 - 9095708
Alignment:
Q  175 ctatttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  9095765 ctatttgtttggataatgaggttggtggtttgagggtgaggagaattagggaatttaa 9095708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 34236230 - 34236275
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  34236230 taaggaggttggtggtttgggggtaaggagaattagggagtttaat 34236275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 14316495 - 14316450
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  14316495 taaggaggttggtggtttgggggtaaggagaattagagagtttaat 14316450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 29375790 - 29375745
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  29375790 taaggaggttggaggtttgggggtaaggagaattagggagtttaat 29375745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 38153672 - 38153717
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  38153672 taaggaggttggtggtttgggggtaaggagaattagtgagtttaat 38153717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 16559099 - 16559144
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||    
T  16559099 taaggaggttggtggtttgggggtaaggagaattagagaatttaat 16559144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 16606563 - 16606518
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||    
T  16606563 taaggaggttggtggtttgggggtaaggagaattagagaatttaat 16606518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 34792109 - 34792150
Alignment:
Q  191 ggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  34792109 ggaggttggtggtttgggggtaaggagaattagagagtttaa 34792150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 27544034 - 27544088
Alignment:
Q  177 atttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    |||||||||||||| |||||||| |||||||  |||||||||||||| ||||||||    
T  27544034 atttgtttggataaagaggttggcggtttga-agtaaggagaattagagagtttaa 27544088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 40681703 - 40681758
Alignment:
Q  178 tttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||  |||||||||||||||||   |||| |||||||||||||||||||||    
T  40681703 tttgtttgagtaaggaggttggtggttatggggtgaggagaattagggagtttaat 40681758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 40434148 - 40434193
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40434148 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 40434193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 19845554 - 19845598
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  19845554 taaggaggttggtgatttgagggtaaggagaattagggagtttaa 19845598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 11772916 - 11772971
Alignment:
Q  177 atttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    |||||||||||||||||||||||   |||| |||||| ||||||||||||||||||    
T  11772916 atttgtttggataaggaggttggcaatttgggggtaaagagaattagggagtttaa 11772971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 25131523 - 25131477
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaatg 234  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||    
T  25131523 taaggaggttggtggtttgggggtaaggagaattaggaaatttaatg 25131477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 5726150 - 5726195
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  5726150 taaggaggttggtggtttgcgggtatggagaattaaggagtttaat 5726195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 29969587 - 29969628
Alignment:
Q  192 gaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  29969587 gaggttggtggtttgagggtaaggagtattagggtgtttaat 29969628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 296294 - 296349
Alignment:
Q  178 tttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||  ||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  296294 tttgtttgagtaaggaggttggtagtttgggggtaaggagaagtagggagattaat 296349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 7319692 - 7319742
Alignment:
Q  180 tgtttggataaggaggttggtggtttgaggg-taaggagaattagggagtt 229  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||||||    
T  7319692 tgtttggataaggaggttggaggtttgggggataaggagaatgagggagtt 7319742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 7447485 - 7447440
Alignment:
Q  175 ctatttgtttggataaggaggttggtggtttgagggtaaggagaat 220  Q
    |||||||| || |||||||||||||||||||| |||| ||||||||    
T  7447485 ctatttgtatgaataaggaggttggtggtttgggggttaggagaat 7447440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 20509401 - 20509446
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  20509401 taaggaggttggtgggttgggggtaaggagtattagagagtttaat 20509446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 5633865 - 5633909
Alignment:
Q  189 aaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||||    
T  5633865 aaggaggttggaggtttggaggtaaggagaattagtgagtttaat 5633909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 23878003 - 23878057
Alignment:
Q  177 atttgtttggataaggaggttggtggtttgagggtaaggagaattagggagttta 231  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  23878003 atttgtttggataaggtggttggtggtttgggggtaaggtgaattagggagttta 23878057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 8249561 - 8249516
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  8249561 taaggaggttggtggtttgggggtaaggagaattagggagtttaat 8249516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 30723602 - 30723557
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30723602 taaggaggttggtggtttgggggtaaggagaattagggagtttaat 30723557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 12832593 - 12832548
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||    
T  12832593 taaggaggttggtggtttgggggtaaggagtattagagagtttaat 12832548  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 12864568 - 12864523
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||    
T  12864568 taaggaggttggtggtttgggggtaaggagtattagagagtttaat 12864523  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 25325137 - 25325182
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  25325137 taaggaggttggtggattgggggtaaggagaattagggaatttaat 25325182  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 22935617 - 22935660
Alignment:
Q  190 aggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||    
T  22935617 aggaggttggcggtttgggggtaaggagaattagggattttaat 22935660  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 42456172 - 42456219
Alignment:
Q  85 gatgagcagaattggggtctcaaaccgtttcgtatgttgaaatgttgg 132  Q
    |||||| ||||||||||||  |||||||| ||||||||||||||||||    
T  42456172 gatgaggagaattggggtcctaaaccgttacgtatgttgaaatgttgg 42456219  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 460176 - 460131
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  460176 taaggaggttggtggtttgggggtaaggagaattagggagtttaat 460131  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 16839306 - 16839351
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  16839306 taaggaggttggtggtttgggggtaaggagaattagagagtttaat 16839351  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 43775263 - 43775306
Alignment:
Q  190 aggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||    
T  43775263 aggaggttggcggtttgggggtaaggagaattagggactttaat 43775306  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 17858171 - 17858216
Alignment:
Q  175 ctatttgtttggataaggaggttggtggtttgagggtaaggagaat 220  Q
    |||||||| || |||||||||||||||||||| |||| ||||||||    
T  17858171 ctatttgtatgaataaggaggttggtggtttgggggttaggagaat 17858216  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 20947115 - 20947160
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  20947115 taaggaggttggtggtttgggggtaaggagaattagggagtttaat 20947160  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 12807569 - 12807625
Alignment:
Q  177 atttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||||||||||||||||||  |||| | |||||||||||||||||||    
T  12807569 atttgtttggataaggaggttggtggtttaggggttatgagaattagggagtttaat 12807625  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 16315193 - 16315241
Alignment:
Q  184 tggataaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  16315193 tggataaggaggttggtggtttgggggtaaggagaattagggaatttaa 16315241  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 21579734 - 21579694
Alignment:
Q  193 aggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21579734 aggttggtggtttgagggtaaggagaattagggagtttaat 21579694  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 10289487 - 10289539
Alignment:
Q  180 tgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    |||||||| | |||||||||||||||| |||| ||||||||||| ||||||||    
T  10289487 tgtttggacagggaggttggtggtttgggggtcaggagaattagagagtttaa 10289539  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 39529693 - 39529635
Alignment:
Q  175 ctatttgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||||||||| ||  | |||||||||| |||||||| || |||||||||    
T  39529693 ctatttgtttggataaggagttttatagtttgagggttaggagaatgagagagtttaat 39529635  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 30504748 - 30504785
Alignment:
Q  196 ttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  30504748 ttggtggtttgggggtacggagaattagggagtttaat 30504785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 34600977 - 34600932
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  34600977 taaggaggttagtggtttgggggtaaggagaattagggagtttaat 34600932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 34627522 - 34627477
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  34627522 taaggaggttagtggtttgggggtaaggagaattagggagtttaat 34627477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 10304249 - 10304208
Alignment:
Q  192 gaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  10304249 gaggttggtggtttgggggtaaggagaattagagagtttaat 10304208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 32197908 - 32197863
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||    
T  32197908 taaggaggttggcggtttgggggttaggagaattagggagtttaat 32197863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 34722254 - 34722209
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  34722254 taaggaggttactggtttgggggtaaggagaattagggagtttaat 34722209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 14362958 - 14362911
Alignment:
Q  179 ttgtttggataaggaggttggtggtttgagggtaaggagaattaggga 226  Q
    ||||||||||||||||||| || ||||| |||||| ||||||||||||    
T  14362958 ttgtttggataaggaggttagttgtttgggggtaaagagaattaggga 14362911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 12687195 - 12687233
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattaggga 226  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  12687195 taaggaggttggtggtttgggggtaaggagtattaggga 12687233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 2540665 - 2540620
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||| || ||||||||||||| || ||||||    
T  2540665 taaggaggttggtggtttggggataaggagaattagagaatttaat 2540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 24573835 - 24573783
Alignment:
Q  180 tgtttggataaggaggttggtggtttgagggtaaggagaattagggagtttaa 232  Q
    ||||||| |||||||||||| |||||  |||| |||||| |||||||||||||    
T  24573835 tgtttggctaaggaggttggaggttttggggttaggagacttagggagtttaa 24573783  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 27364846 - 27364801
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  27364846 taaggaggttggtggtttaggggtaaggagaattagggagtttaat 27364801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 44890156 - 44890112
Alignment:
Q  189 aaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  44890156 aaggaggttagtgatttgagggtaaggagaattagggagtttaat 44890112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 36099651 - 36099609
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagttt 230  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  36099651 taaggaggttggtggtttgggcgtaaggagaattagggagttt 36099609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 29644447 - 29644404
Alignment:
Q  189 aaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  29644447 aaggaggttggtggtttg-gggtgaggagaattagggagtttaat 29644404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 51799562 - 51799606
Alignment:
Q  189 aaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||    
T  51799562 aaggaggttggtggtttgggggtaaggagttttagggagtttaat 51799606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 42475327 - 42475370
Alignment:
Q  190 aggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||    
T  42475327 aggaggttggcggtttgggggtaaggagaattagggactttaat 42475370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 3927669 - 3927624
Alignment:
Q  189 aaggaggttggtggtttgagggt-aaggagaattagggagtttaat 233  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||    
T  3927669 aaggaggttggtggtttgggggtaaaggagatttagggagtttaat 3927624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 25393409 - 25393364
Alignment:
Q  188 taaggaggttggtggtttgagggtaaggagaattagggagtttaat 233  Q
    |||||||||||||| |||| ||||||||||||||  ||||||||||    
T  25393409 taaggaggttggtgttttgggggtaaggagaattctggagtttaat 25393364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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