View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7083_low_2 (Length: 438)
Name: NF7083_low_2
Description: NF7083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7083_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 36607417 - 36607009
Alignment:
| Q |
19 |
cttcacctcctgctccagatgctgcttttaagagagcagccaaagtagcagtatcaaagagctccttgctatctccttcatcatcagattccacttcctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607417 |
cttcacctcctgctccagatgctgcttttaagagagcagccaaagtagcagtatcaaagagctccttgctatctccttcatcatcagattccacttcctc |
36607318 |
T |
|
| Q |
119 |
atctgagtcagttacaatctggccatcaattctgtcatcctgtgaactctcacttgccctaatttgcttctccaattcctccaagtatttattagcagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607317 |
atctgagtcagttacaatctggccatcaattctgtcatcctgtgaactctcacttgccctaatttgcttctccaattcctccaagtatttattagcagaa |
36607218 |
T |
|
| Q |
219 |
tcggagcctccaaagatcattgattcatccttcgtatccgacaccgagtcatcaatctctctgtcaacgtgatgatcaacagcagcctcaacatggctgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607217 |
tcggagcctccaaagatcattgattcatccttcgtatccgacaccgagtcatcaatctctctgtcaacgtgatgatcaacagcagcctcaacatggctgc |
36607118 |
T |
|
| Q |
319 |
catcatccacctcgataacacgatcaacattgctctcagcctccccctcaacagcattatcaacatggctcccatcttccacctcaacaacacggtcaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607117 |
catcatccacctcgataacacgatcaacattgctctcagcctccccctcaacagcattatcaacatggctcccatcttccacctcaacaacacggtcaac |
36607018 |
T |
|
| Q |
419 |
attgctctc |
427 |
Q |
| |
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||||||||| |
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| T |
36607017 |
attgctctc |
36607009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 306 - 427
Target Start/End: Complemental strand, 36607058 - 36606937
Alignment:
| Q |
306 |
tcaacatggctgccatcatccacctcgataacacgatcaacattgctctcagcctccccctcaacagcattatcaacatggctcccatcttccacctcaa |
405 |
Q |
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||||||||||| ||||| |||||||| | |||||| |||||||||||||| || ||| ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
36607058 |
tcaacatggctcccatcttccacctcaacaacacggtcaacattgctctccgcttcctcctcaacagcagtatcaacatggctctcatcttccacctcaa |
36606959 |
T |
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| Q |
406 |
caacacggtcaacattgctctc |
427 |
Q |
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||||||| |||||||| ||||| |
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| T |
36606958 |
caacacgatcaacattactctc |
36606937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 36606998 - 36606882
Alignment:
| Q |
294 |
tcaacagcagcctcaacatggctgccatcatccacctcgataacacgatcaacattgctctcagcctccccctcaacagcattatcaacatggctcccat |
393 |
Q |
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|||||||||| ||||||||||| |||| |||||||| | ||||||||||||||| ||||| | ||| | ||||| |||||||||||| |||||||| |
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| T |
36606998 |
tcaacagcagtatcaacatggctctcatcttccacctcaacaacacgatcaacattactctcctcttcctctgcaacaacattatcaacattgctcccat |
36606899 |
T |
|
| Q |
394 |
cttccacctcaacaaca |
410 |
Q |
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||||||||||||||||| |
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| T |
36606898 |
cttccacctcaacaaca |
36606882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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