View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7083_low_3 (Length: 423)

Name: NF7083_low_3
Description: NF7083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7083_low_3
NF7083_low_3
[»] chr1 (4 HSPs)
chr1 (16-305)||(1466669-1466958)
chr1 (94-282)||(35923210-35923398)
chr1 (109-273)||(5050497-5050661)
chr1 (355-416)||(1467094-1467155)
[»] chr3 (7 HSPs)
chr3 (16-283)||(28838369-28838636)
chr3 (18-286)||(17724447-17724715)
chr3 (18-286)||(19025676-19025944)
chr3 (16-280)||(9450596-9450860)
chr3 (16-288)||(28830399-28830671)
chr3 (108-269)||(26640704-26640865)
chr3 (110-268)||(20798757-20798914)
[»] chr7 (7 HSPs)
chr7 (110-271)||(19545404-19545565)
chr7 (113-276)||(19538748-19538911)
chr7 (110-266)||(47228519-47228675)
chr7 (110-235)||(47465706-47465831)
chr7 (110-239)||(19549755-19549885)
chr7 (126-239)||(19554968-19555081)
chr7 (133-190)||(19551972-19552029)
[»] chr5 (7 HSPs)
chr5 (94-269)||(19242376-19242551)
chr5 (110-269)||(9211371-9211530)
chr5 (90-276)||(38783792-38783978)
chr5 (110-292)||(9369955-9370137)
chr5 (114-269)||(12560131-12560287)
chr5 (110-273)||(35181989-35182152)
chr5 (118-242)||(12556892-12557016)
[»] chr8 (4 HSPs)
chr8 (112-294)||(9937274-9937456)
chr8 (110-273)||(9939644-9939807)
chr8 (112-270)||(9945694-9945855)
chr8 (137-251)||(3427899-3428013)
[»] chr4 (2 HSPs)
chr4 (110-269)||(44089673-44089832)
chr4 (223-268)||(38052155-38052200)
[»] chr2 (3 HSPs)
chr2 (182-299)||(7959585-7959702)
chr2 (114-161)||(43924059-43924105)
chr2 (200-240)||(43923991-43924031)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 1466669 - 1466958
Alignment:
Q  16 caaatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagtggtgaggaaagtgagatatataaacaaagggtatggcattggattacatac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  1466669 caaatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagcggtgaggaaagtgggatatataaagaaagggtatggcattggattaaatac 1466768  T
Q  116 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1466769 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgacttccattgcacttaggaggggtgcctttctaaggtctacccaagt 1466868  T
Q  216 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatatttttaagttggaatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1466869 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattttgaagttggaatt 1466958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 94 - 282
Target Start/End: Original strand, 35923210 - 35923398
Alignment:
Q  94 ggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtg 193  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||  | |||| |||||||||||||||||||||||    
T  35923210 ggtatggcattgaattacttacttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtg 35923309  T
Q  194 cctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagt 282  Q
    | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  35923310 cttgcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccttccaattttagt 35923398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 5050661 - 5050497
Alignment:
Q  109 tacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtcta 208  Q
    |||||||||||||||||||||||||||| ||||||| |||| |||||||||||   ||||| ||||||||||||||||||||||||    ||||||| |     
T  5050661 tacatacttacctggatggggtcaatggatgatcaaaaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgctcgcctaaggtgtt 5050562  T
Q  209 cccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 273  Q
    | ||||| |   | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5050561 ctcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 5050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 1467094 - 1467155
Alignment:
Q  355 gcaatttcagttcaaaactgaactattcttttgtttcttttttaaagtagcaatttcatttc 416  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  1467094 gcaatttcagttcaaaactgaactattcatttgtttcttttttaatgtagcaatttcatttc 1467155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 28838636 - 28838369
Alignment:
Q  16 caaatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagtggtgaggaaagtgagatatataaacaaagggtatggcattggattacatac 115  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||| |||||||||| |||||||||||||||| |||| ||||    
T  28838636 caaatgtatgtgaaacaatatgtcccacatcgacaatatcagacacaatggtgaggaaagtgggatatataaagaaagggtatggcattgtattatatac 28838537  T
Q  116 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28838536 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacttaggaggggtgcctttctaaggtctacccaagt 28838437  T
Q  216 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28838436 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaattttagtt 28838369  T

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Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 17724447 - 17724715
Alignment:
Q  18 aatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagtggtgaggaaagtgagatatataaacaaagggtatggcattggattacatactt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  17724447 aatgtatgtgaaacaatatgtcccacatcgacaatatcaaacacagcggtgaggaaagtgtgatatataaagaaagggtatggtattggattacatactt 17724546  T
Q  118 acctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17724547 acctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctacccaagtgg 17724646  T
Q  218 tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  17724647 tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttattttaa 17724715  T

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Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 19025676 - 19025944
Alignment:
Q  18 aatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagtggtgaggaaagtgagatatataaacaaagggtatggcattggattacatactt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  19025676 aatgtatgtgaaacaatatgtcccacatcgacaatatcaaacacagcggtgaggaaagtgtgatatataaagaaagggtatggtattggattacatactt 19025775  T
Q  118 acctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19025776 acctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctacccaagtgg 19025875  T
Q  218 tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  19025876 tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttattttaa 19025944  T

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Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 9450596 - 9450860
Alignment:
Q  16 caaatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagtggtgaggaaagtgagatatataaacaaagggtatggcattggattacatac 115  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| || |||| |||||||| |||||||||| ||||| ||||||||||||||||||||    
T  9450596 caaatgcatgtgaaacaataagtcccacatcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatac 9450695  T
Q  116 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||    
T  9450696 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcactttggaggggtgccttcctaaggtctacccaagt 9450795  T
Q  216 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatctta 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9450796 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaatctta 9450860  T

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Target: chr3; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 28830671 - 28830399
Alignment:
Q  16 caaatgtatgtgaaacaataagtcccacatcgacaatatcaaacagagtggtgaggaaagtgagatatataaacaaagggtatggcattggattacatac 115  Q
    |||||| |||||||||||||||||||||||||||||||||| | ||||  |||||||||||| |||||| ||| ||||||||||||||||||||| ||||    
T  28830671 caaatgcatgtgaaacaataagtcccacatcgacaatatcagatagagcagtgaggaaagtgggatataaaaagaaagggtatggcattggattatatac 28830572  T
Q  116 ttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagt 215  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  28830571 ttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattgcacttaggaggggtgcttttctaaggtctacccaagt 28830472  T
Q  216 ggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaat 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||    
T  28830471 ggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggccccttccaattttagtttaaat 28830399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 108 - 269
Target Start/End: Original strand, 26640704 - 26640865
Alignment:
Q  108 ttacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtct 207  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||   ||||||||||    
T  26640704 ttacttacttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtct 26640803  T
Q  208 acccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 269  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26640804 acccaagtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggcccc 26640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 268
Target Start/End: Complemental strand, 20798914 - 20798757
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||  | |||| |||||||||||||||||  |||||    |||||||||||    
T  20798914 acatacttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctac 20798815  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 268  Q
    ||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| ||||    
T  20798814 ccaagtggtggagcctacatcataatttgttgcag-cggggcttgcgttcgcgcagccc 20798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 19545565 - 19545404
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||| ||||||||||  |||||||||||||    
T  19545565 acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattgcactttggaggggtgctcttctaaggtctac 19545466  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545465 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 19545404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 19538911 - 19538748
Alignment:
Q  113 tacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccca 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||| ||||||||||  | |||||||||||| |    
T  19538911 tacttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattgcactttggaggggtgctatcctaaggtctaccta 19538812  T
Q  213 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19538811 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 19538748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 47228519 - 47228675
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||     
T  47228519 acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaggtgacctccattgcacttaggaggggtgtttttctaaggtctat 47228618  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggc 266  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  47228619 ccaagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc 47228675  T

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Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 47465831 - 47465706
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||    
T  47465831 acatacttacctggatggggtcaatgggtgatcatgaaggcccatggcctagaaaggtggcctccattgcacttgggaggggtgcttttctaaggtctac 47465732  T
Q  210 ccaagtggtggagcctacatcataat 235  Q
     |||||||||||||||||||||||||    
T  47465731 tcaagtggtggagcctacatcataat 47465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 19549885 - 19549755
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||| ||||||   ||||  ||||||||||||||||||| ||| | |||||||   ||    
T  19549885 acatacatacctggacggggtcaatgggtgatcaataaggcccatgacctagacgagtgacttccattgcacttaggagggttgcttgtctaaggctcac 19549786  T
Q  210 ccaagtggtggag-cctacatcataatttgt 239  Q
    ||||||||||||| ||||| |||||||||||    
T  19549785 ccaagtggtggagacctacgtcataatttgt 19549755  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 19555081 - 19554968
Alignment:
Q  126 ggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcct 225  Q
    ||||||||||| ||||||| |||| ||||| ||||||   || | |||||||||||||||||||| |||   ||||||| | ||||||||||||| ||||    
T  19555081 ggggtcaatggatgatcaaaaaggtccatgacctagacgagtaacctccattgcacttaggagggttgctggtctaaggcccacccaagtggtggtgcct 19554982  T
Q  226 acatcataatttgt 239  Q
    || |||||||||||    
T  19554981 acgtcataatttgt 19554968  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 19552029 - 19551972
Alignment:
Q  133 atgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggg 190  Q
    ||||||||||||||||||||||| ||||||   |||| ||||||||||||||||||||    
T  19552029 atgggtgatcaagaaggcccatgacctagacgagtgacctccattgcacttaggaggg 19551972  T

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Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 19242551 - 19242376
Alignment:
Q  94 ggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtg 193  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||    
T  19242551 ggtatgacattgaattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtg 19242452  T
Q  194 cctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 269  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  19242451 ctagtctaaggtctacccaagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggcccc 19242376  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 9211530 - 9211371
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||| || |||||||||| | || |||||    |||||||||||    
T  9211530 acatacttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctac 9211431  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211430 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 9211371  T

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Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 276
Target Start/End: Original strand, 38783792 - 38783978
Alignment:
Q  90 aaagggtatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggagg 189  Q
    |||| ||||| |||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||   ||||| |||||||||||||||||||    
T  38783792 aaagtgtatgacattggacaacatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggagg 38783891  T
Q  190 ggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 276  Q
    |||||||   |||||| | | ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38783892 ggtgcctacttaaggtgttctcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 38783978  T

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Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 9369955 - 9370137
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  | |||| || |||||||||| | ||||||||    |||||||||||    
T  9369955 acatacttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcactttgaaggggtgctagcctaaggtctac 9370054  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattt 292  Q
    |||||||||||||||||||||||||| |||||  || ||||| |||||||||||||||||   |||| |||||||||||||||    
T  9370055 ccaagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccctcccaattttagtttaaatattt 9370137  T

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Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 12560131 - 12560287
Alignment:
Q  114 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtcta-ccca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||| ||||||||||    |||||||||| ||||    
T  12560131 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcactttggaggggtgctagcctaaggtctacccca 12560230  T
Q  213 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 269  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  12560231 agtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagcccc 12560287  T

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Target: chr5; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 110 - 273
Target Start/End: Original strand, 35181989 - 35182152
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    ||||||||||||||||||||||||||| ||||||  ||||  |||||||||||  ||||| ||||||||||||| ||||||||||   |||||||| | |    
T  35181989 acatacttacctggatggggtcaatggatgatcattaaggttcatggcctagattggtgacctccattgcactttggaggggtgctagtctaaggtgttc 35182088  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 273  Q
     ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182089 tcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 35182152  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 12556892 - 12557016
Alignment:
Q  118 acctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtgg 217  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||  |   ||| ||||||||||||| ||||||||||    ||||||||||| |||||||    
T  12556892 acctggatggggtcaataggtgatcaagaaggctcatagcctaagacaatgacctccattgcactttggaggggtgctggcctaaggtctactcaagtgg 12556991  T
Q  218 tggagcctacatcataatttgttgc 242  Q
    |||||||||||||||||||||||||    
T  12556992 tggagcctacatcataatttgttgc 12557016  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 294
Target Start/End: Original strand, 9937274 - 9937456
Alignment:
Q  112 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccc 211  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||   ||||| ||||||||||||| |||||||||||| |||||||| | | |    
T  9937274 atacttacctggatggggtcaatggatgatcatgaaggtccatggcctaggttggtgacctccattgcacttcggaggggtgcctatctaaggtgttctc 9937373  T
Q  212 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttagtttaaatattttt 294  Q
    |||| |   ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||  |||||||| |||||||    
T  9937374 aagtagaacagcctacatcatagtttgttgctgtgggggcctgcgttcgcgcggccccttccaataatagtttaattattttt 9937456  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 110 - 273
Target Start/End: Original strand, 9939644 - 9939807
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    ||||||||||||||||||||||||||| |||||| ||||| | |||||||||   ||||| ||||||||||||| ||||||||||||  ||||||| | |    
T  9939644 acatacttacctggatggggtcaatggatgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgcctacctaaggtgttc 9939743  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttc 273  Q
     ||||| |   | |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9939744 tcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccctcttc 9939807  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 9945694 - 9945855
Alignment:
Q  112 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctaccc 211  Q
    |||||||||||||||||||||||||  ||||| ||||| | |||||||||   ||||| ||||||||||||| ||||||||| ||  ||||||| | | |    
T  9945694 atacttacctggatggggtcaatggacgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgtctgcctaaggtgttctc 9945793  T
Q  212 aagtgg---tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccc 270  Q
    |||| |    | ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  9945794 aagtagaacagcagcctacattataatttgttgctgtgggggcctgcgttcgcgtggccccc 9945855  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 3428013 - 3427899
Alignment:
Q  137 gtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatt 236  Q
    |||||||||||||||||| | ||||    |||| ||||||||||| | ||||||||||     |||||||| ||||||||||||||  |||||| |||||    
T  3428013 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcaccttggaggggtgctagcttaaggtctgcccaagtggtggagtttacatcgtaatt 3427914  T
Q  237 tgttgctgtgggggc 251  Q
    |||||| || |||||    
T  3427913 tgttgcagtaggggc 3427899  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 110 - 269
Target Start/End: Original strand, 44089673 - 44089832
Alignment:
Q  110 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctagaaaggtgatctccattgcacttaggaggggtgcctttctaaggtctac 209  Q
    |||||||||||||||||||||| ||| ||||||| |||||| ||||||||||   ||||| ||||||||||||| |||||||||||| |||||||| | |    
T  44089673 acatacttacctggatggggtctatgagtgatcatgaaggctcatggcctaggttggtgacctccattgcactttggaggggtgcctatctaaggtgttc 44089772  T
Q  210 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 269  Q
     ||||| |   || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  44089773 tcaagtagaacagtctacatcataatttgttgctgagggggcctgcgttcgcgcggcccc 44089832  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 38052155 - 38052200
Alignment:
Q  223 cctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 268  Q
    ||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  38052155 cctacattataatttgttgttgtggaggcctgcgtgcgcgcggccc 38052200  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 7959702 - 7959585
Alignment:
Q  182 ttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaatcttag 281  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || || |||    
T  7959702 ttaggaggggtgcctttttaaggtctatccaaatggtggagcctacatcataatttgttgctgtgggggtctgcgttcgcgcggccccttccagtcatag 7959603  T
Q  282 tttaaatatttttaagtt 299  Q
    ||||||| |||| |||||    
T  7959602 tttaaattttttgaagtt 7959585  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 43924105 - 43924059
Alignment:
Q  114 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctag 161  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  43924105 acttacctgaatggggtcaatgg-tgatcaagaaggcccatggcctag 43924059  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 43924031 - 43923991
Alignment:
Q  200 taaggtctacccaagtggtggagcctacatcataatttgtt 240  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  43924031 taaggtctactcaagtggtggagcctacattataatttgtt 43923991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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