View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7083_low_5 (Length: 404)

Name: NF7083_low_5
Description: NF7083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7083_low_5
NF7083_low_5
[»] chr4 (4 HSPs)
chr4 (1-393)||(43576584-43576976)
chr4 (272-356)||(5240445-5240529)
chr4 (272-356)||(10653842-10653926)
chr4 (272-356)||(10867987-10868071)
[»] chr7 (6 HSPs)
chr7 (1-393)||(42126066-42126458)
chr7 (105-158)||(26084100-26084153)
chr7 (105-158)||(26107887-26107940)
chr7 (274-344)||(38846392-38846462)
chr7 (292-366)||(37012169-37012243)
chr7 (292-324)||(19606873-19606905)
[»] chr8 (5 HSPs)
chr8 (127-393)||(15295939-15296205)
chr8 (127-393)||(15476308-15476574)
chr8 (1-80)||(15296227-15296306)
chr8 (1-80)||(15476596-15476675)
chr8 (105-155)||(29155130-29155180)
[»] chr1 (4 HSPs)
chr1 (88-305)||(46654114-46654331)
chr1 (272-356)||(2360662-2360746)
chr1 (274-341)||(47706471-47706538)
chr1 (105-155)||(10733100-10733150)
[»] chr6 (5 HSPs)
chr6 (105-158)||(4501499-4501552)
chr6 (105-158)||(15825051-15825104)
chr6 (105-158)||(34311045-34311098)
chr6 (272-356)||(14815903-14815987)
chr6 (280-324)||(14617253-14617297)
[»] chr5 (2 HSPs)
chr5 (105-158)||(549689-549742)
chr5 (105-157)||(30280101-30280153)
[»] scaffold1049 (1 HSPs)
scaffold1049 (105-157)||(1216-1268)
[»] chr2 (1 HSPs)
chr2 (97-184)||(35552771-35552858)


Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 43576976 - 43576584
Alignment:
Q  1 agtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggaggag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576976 agtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggaggag 43576877  T
Q  101 gttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576876 gttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaag 43576777  T
Q  201 aactctaatagttgccatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatat 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43576776 aactctaatagttgtcatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatat 43576677  T
Q  301 ctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43576676 ctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttaatgtccat 43576584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 5240529 - 5240445
Alignment:
Q  272 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 356  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| | |||||| ||| | |||| |||||||| |||| |||||    
T  5240529 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcaacatgaaatttgactttgtaaatccatctacatccaat 5240445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 10653926 - 10653842
Alignment:
Q  272 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 356  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| ||||||||  || | |||| |||||||| |||| |||||    
T  10653926 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatgaaacttgactttgtaaatccatctacatccaat 10653842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 10868071 - 10867987
Alignment:
Q  272 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 356  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| | ||||||  || | |||| |||||||| |||| |||||    
T  10868071 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcaacatgaaaattgactttgtaaatccatctacatccaat 10867987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 42126458 - 42126066
Alignment:
Q  1 agtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcagagagagtaagaccaggaggag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  42126458 agtttggtgttccattgtctacttgcctgttttaatccataaagggatctttgcagtttacaaacttgattaggagcaaagagagtaaaaccaggaggag 42126359  T
Q  101 gttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaag 200  Q
    | ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  42126358 gctgcatgtatacttctccattgagatcaccatgaaaaaaggcagtattgacatcaagctggtaaataggccaatttttagaagcagcaatagacagaag 42126259  T
Q  201 aactctaatagttgccatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatat 300  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42126258 aactctaatagttgtcatctttaccacaggactgaatgtgtccttatagtcaataccttatgtttgtgtgaaacctttggcaacaagtctggccttatat 42126159  T
Q  301 ctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 393  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  42126158 ctctcaatggtgccattagcatgaagcttaagtttgaaaatccatttacaatcaatggctttcttatgagcaggcagtgaagttaatgtccat 42126066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 26084100 - 26084153
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 158  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26084100 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 26084153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 26107887 - 26107940
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 158  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26107887 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 26107940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 38846392 - 38846462
Alignment:
Q  274 cctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatcca 344  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||  |||||| | |||| |||| |||||||    
T  38846392 cctttagcaacaagtctagccttgtatctctcaatggtgccatctgcatgatgcttaactttgtaaatcca 38846462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 37012243 - 37012169
Alignment:
Q  292 gccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaatggctttctta 366  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||  | | |||||||||||| || | |||||||    
T  37012243 gccttatatctttcaatggtgccattagcatgatatttaattttatagacccatttacaaccgataggtttctta 37012169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 19606873 - 19606905
Alignment:
Q  292 gccttatatctctcaatggtgccattagcatga 324  Q
    ||||||||||| |||||||||||||||||||||    
T  19606873 gccttatatctttcaatggtgccattagcatga 19606905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 127 - 393
Target Start/End: Complemental strand, 15296205 - 15295939
Alignment:
Q  127 tcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaagaactctaatagttgccatctttacca 226  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||| |||||||| |||| |||||||||||    
T  15296205 tcaccatgaagaaatgtagtattgacatctagctggtaaagagaccaattttgagaagcggcaatggaaagaaggactctaatggttgtcatctttacca 15296106  T
Q  227 caggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaag 326  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15296105 ctggactgaatgtgtccatataatcaataccttctgtttgtgtgaaacctttagcaacaagtctggccttatatctttcaatggtgccattagtatgaag 15296006  T
Q  327 tttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 393  Q
     ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||  |||||||    
T  15296005 cttaagtttgaaaatccatttacaaccaatggctttctaatgagccggcaatgaagttagtgtccat 15295939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 127 - 393
Target Start/End: Complemental strand, 15476574 - 15476308
Alignment:
Q  127 tcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcagcaatagacagaagaactctaatagttgccatctttacca 226  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||||| |||||||| |||| |||||||||||    
T  15476574 tcaccatgaagaaatgtagtattgacatctagctggtaaagagaccaattttgagaagcggcaatggaaagaaggactctaatggttgtcatctttacca 15476475  T
Q  227 caggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaag 326  Q
    | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  15476474 ctggactgaatgtgtccatataatcaataccttctgtttgtgtgaaacctttagcaacaagtctggccttatatctttcaatggtgccattagtatgaag 15476375  T
Q  327 tttaagtttgaaaatccatttacaaccaatggctttcttatgagcaggcagtgaagttgatgtccat 393  Q
     ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||  |||||||    
T  15476374 cttaagtttgaaaatccatttacaaccaatggctttctaatgagccggcaatgaagttagtgtccat 15476308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15296306 - 15296227
Alignment:
Q  1 agtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcaga 80  Q
    ||||||||||||||||   | ||| ||||||| |||||||| || ||||||||| | ||||| |||||||| ||||||||    
T  15296306 agtttggtgttccattacttactttcctgtttcaatccatatagtgatctttgtcgcttacacacttgattgggagcaga 15296227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15476675 - 15476596
Alignment:
Q  1 agtttggtgttccattgtctgcttgcctgttttaatccataaagggatctttgtagtttacaaacttgattaggagcaga 80  Q
    ||||||||||||||||   | ||| ||||||| |||||||| || ||||||||| | ||||| |||||||| ||||||||    
T  15476675 agtttggtgttccattacttactttcctgtttcaatccatatagtgatctttgtcgcttacacacttgattgggagcaga 15476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 29155180 - 29155130
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatc 155  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||    
T  29155180 catgtatacttcttcctcgagatcaccatgaaggaaagcattattgacatc 29155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 305
Target Start/End: Complemental strand, 46654331 - 46654114
Alignment:
Q  88 agaccaggaggaggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaagcag 187  Q
    ||||||||||||| |||||| || ||||||||||| | ||||||| ||||||| ||||||||||||||||| ||  | |  ||||| ||||||||||| |    
T  46654331 agaccaggaggagcttgcatatagacttcttcattcaaatcaccacgaagaaaggcagtattgacatcaagttgaaataagggccagttttgagaagctg 46654232  T
Q  188 caatagacagaagaactctaatagttgccatctttaccacaggactgaatgtgtccatgtagtcaataccttctgtttgtgtgaaacctttggcaacaag 287  Q
    ||||||  | ||||  ||||| | ||| ||| ||||| ||| || |||| ||||||||||| || || ||||||||||||||||| || ||||| || |     
T  46654231 caatagctataagagttctaacaattgtcatttttactacatgattgaaagtgtccatgtaatctatgccttctgtttgtgtgaagcccttggcgaccaa 46654132  T
Q  288 tctggccttatatctctc 305  Q
    |||||||||||| |||||    
T  46654131 tctggccttatacctctc 46654114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 2360746 - 2360662
Alignment:
Q  272 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 356  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| |||||| | ||| | |||| |||||||| |||| |||||    
T  2360746 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatggaatttgactttgtaaatccatctacatccaat 2360662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 47706471 - 47706538
Alignment:
Q  274 cctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaat 341  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||  |||||| | |||| |||| ||||    
T  47706471 cctttagcaacaagtctagccttgtatctctcaatggtgccatctgcatgatgcttaactttgtaaat 47706538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10733150 - 10733100
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatc 155  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||    
T  10733150 catgtatacttcttcctcgagatcaccatgaaggaaagcattattgacatc 10733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 4501552 - 4501499
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 158  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  4501552 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 4501499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 15825104 - 15825051
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 158  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  15825104 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 15825051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 34311098 - 34311045
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 158  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  34311098 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 34311045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 14815987 - 14815903
Alignment:
Q  272 aacctttggcaacaagtctggccttatatctctcaatggtgccattagcatgaagtttaagtttgaaaatccatttacaaccaat 356  Q
    ||||||||||||| | ||| || |||||||||||||| ||||||| |||||||| ||| | |||| |||||||| |||| |||||    
T  14815987 aacctttggcaaccaatcttgctttatatctctcaatagtgccatcagcatgaaatttgactttgtaaatccatctacatccaat 14815903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 14617297 - 14617253
Alignment:
Q  280 gcaacaagtctggccttatatctctcaatggtgccattagcatga 324  Q
    ||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  14617297 gcaaccagtcttgccttatatctttcaatggtgccatttgcatga 14617253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 549689 - 549742
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaag 158  Q
    |||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  549689 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaag 549742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 30280101 - 30280153
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaa 157  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  30280101 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaa 30280153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1049 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 1216 - 1268
Alignment:
Q  105 catgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaa 157  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||||    
T  1216 catgtaaacttcttcattgaggtcaccatggagaaatgcattattgacatcaa 1268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 35552858 - 35552771
Alignment:
Q  97 ggaggttgcatgtatacttcttcattgagatcaccatgaagaaatgcagtattgacatcaagctggtaaagaggccaattttgagaag 184  Q
    |||||||||||||| ||||||||||  ||||  ||||||||||| ||  | || |||||||  ||  |||||||||||||||||||||    
T  35552858 ggaggttgcatgtaaacttcttcatcaagatgtccatgaagaaaagccttgttaacatcaatttgaaaaagaggccaattttgagaag 35552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University