View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7084_high_2 (Length: 667)
Name: NF7084_high_2
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7084_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 63 - 310
Target Start/End: Complemental strand, 41342696 - 41342449
Alignment:
| Q |
63 |
ccattcctatagtacattacaaccacaaatgcgtgtttgttcttttttaatttcatattaattgcgtcaannnnnnnctgaaataataatgtttacaata |
162 |
Q |
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| T |
41342696 |
ccattcctatagtacattacaaccacaaatgcgtgtttgttcttttttaatttcatattaattgcgtcaatttttttctgaaataataatgtttacaata |
41342597 |
T |
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| Q |
163 |
aagatcatgtggtgtttaatttaatttgatattaatacaaataaatggcagatgcgtgcagcagtatctgaagttgctacttattttccaacagcaataa |
262 |
Q |
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| T |
41342596 |
aagatcatgtggtgtttaatttaatttgatattaatacaaataaatggcagatgcgtgcagcagtatctgaagttgctacttattttccaacagcaataa |
41342497 |
T |
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| Q |
263 |
tcagtggaagaagccgagagaaggtgagttataaagcttacttaattt |
310 |
Q |
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| T |
41342496 |
tcagtggaagaagccgagagaaggtgagttataaagcttacttaattt |
41342449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 347 - 566
Target Start/End: Complemental strand, 41342404 - 41342185
Alignment:
| Q |
347 |
tctcattatataactttttggtttaggtaaaagattttgtgaagttaaataatttatattatgctgggagtcatggtatggacataatggcaccatcagg |
446 |
Q |
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| T |
41342404 |
tctcattatataactttttggtttaggtaaaagattttgtgaagttaaataatttatattatgctgggagtcatggtatggacataatggcaccatcagg |
41342305 |
T |
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| Q |
447 |
accaattagatcttctgacggcaaccaccaatgctacaacaacactcttgacacaaatgtgagtaattccatttgtgccaatatactttaaccattttta |
546 |
Q |
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| T |
41342304 |
accaattagatcttctgacggcaaccaccaatgctacaacaacactcttgacacaaatgtgagtaattccatttgtgccaatatactttaaccattttta |
41342205 |
T |
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| Q |
547 |
attagagcatttgattctta |
566 |
Q |
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| T |
41342204 |
attagagcatttgattctta |
41342185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 18219860 - 18219898
Alignment:
| Q |
177 |
tttaatttaatttgatattaatacaaataaatggcagat |
215 |
Q |
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| T |
18219860 |
tttaatttaatttgatattaacataaataaatggcagat |
18219898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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