View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7084_high_3 (Length: 612)
Name: NF7084_high_3
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7084_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Original strand, 3528872 - 3529458
Alignment:
| Q |
18 |
gtcacaatccttgttccnnnnnnnccttcatttttgccatcattgtttgctcttttcatgacttgcttctaaagtagaaaatgtttctttctcttgtttt |
117 |
Q |
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| T |
3528872 |
gtcacaatccttgttcctttttttccttcatttttgccatcattgtttgctcttttcatgacttgattctaaagtagaaaatgtttctttctcttgtttt |
3528971 |
T |
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| Q |
118 |
tatccacatgagtaagcgccttggcttgtacaccttacaaattccttcaaatcaacgagctcaagtgtgttcccacaatagctctaaatttgatatcact |
217 |
Q |
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| T |
3528972 |
tatccacatgagtaagcgccttggcttgtacaccttacaaattccttcgaatcaacgagctcaagcgtgttcccacaatagctctaaatttgatatcact |
3529071 |
T |
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| Q |
218 |
gcacgaactgaattgtgattctgcatatatacttgtattgttgttaacaacaatcagtaagaaatgtcgtcagacttccatatcgggaggaagactttcg |
317 |
Q |
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| T |
3529072 |
gcacgaactgaattgtgattctgcatatataattgtattgttgttaacaacaatcaataagaaatgtcgtcagacttccatatcggaaggaagactttcg |
3529171 |
T |
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| Q |
318 |
atacaagtatccatacatggatcaaccaccaactttgtttgtgcttcaatgttcatataaatcggtcacatagttgcaccaatggctctgagcaggtcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3529172 |
atacaagtatccatacatggatcaaccaccaactttgtttgtgcttcaatgttcatataaatcggtcacatagttgcaccaatggctctgagcaggtcac |
3529271 |
T |
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| Q |
418 |
ctcgaaccataagatttggtacctcttttgg-nnnnnnntccacacacgtcaaagattaatttacaagtctatagatcttaaataagcacttcataaaga |
516 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3529272 |
ctcgaaccataagatttggtacctcttttggaaaaaaaatccacacacgtcaaagattaatttacaagtctatagatcttaaataagcacttc------a |
3529365 |
T |
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| Q |
517 |
taaagatagtaatagaacacattattgcaaatgagatcacacgattgtaatcaaata--cgagagttacaaagaacgataatattcatctcac |
607 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
3529366 |
taaaaatagtaatagaacacattattgcaaatgagatcacacgattgtaatcaaatatgagagagttacaaagaacgataatattcatttcac |
3529458 |
T |
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