View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7084_high_9 (Length: 256)
Name: NF7084_high_9
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7084_high_9 |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: scaffold0242 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 13455 - 13678
Alignment:
| Q |
16 |
attggaaccaagctttcaacgtaaaccttggctgagcaccacagtatagaattcctactatcatcggtaacagtagtacttgttgtaacttttgttcgct |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13455 |
attggaaccaagctttcaacgtaaaccttggccgagcaccacagtatagaattcctactatcatcggtaacagtagtacttgttgtaacttttgttcgct |
13554 |
T |
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| Q |
116 |
gcactctattttctttccaattatagaggattggatgggattcttggctggtcttaagcaccagtgtatcagcctcttctgaaagaagaagcggcaccaa |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13555 |
gcactctattttctttccaattatagagaattggatgggattcttggctggtcttaagcaccagtgtatcagcctcttctgaaagaagaagcggcaccaa |
13654 |
T |
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| Q |
216 |
ttgaaaatgatactttatcgtgtc |
239 |
Q |
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||||||||||||||||| |||||| |
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| T |
13655 |
ttgaaaatgatactttaccgtgtc |
13678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 22290 - 22513
Alignment:
| Q |
16 |
attggaaccaagctttcaacgtaaaccttggctgagcaccacagtatagaattcctactatcatcggtaacagtagtacttgttgtaacttttgttcgct |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22290 |
attggaaccaagctttcaacgtaaaccttggccgagcaccacagtatagaattcctactatcatcggtaacagtagtacttgttgtaacttttgttcgct |
22389 |
T |
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| Q |
116 |
gcactctattttctttccaattatagaggattggatgggattcttggctggtcttaagcaccagtgtatcagcctcttctgaaagaagaagcggcaccaa |
215 |
Q |
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| T |
22390 |
gcactctattttctttccaattatagagaattggatgggattcttggctggtcttaagcaccagtgtatcagcctcttctgaaagaagaagcggcaccaa |
22489 |
T |
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| Q |
216 |
ttgaaaatgatactttatcgtgtc |
239 |
Q |
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||||||||||||||||| |||||| |
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| T |
22490 |
ttgaaaatgatactttaccgtgtc |
22513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 29476059 - 29476283
Alignment:
| Q |
16 |
attggaaccaagctttcaacgtaaaccttggctgagcaccacagtatagaattcctact------atcatcggtaacagtagtacttgttgtaacttttg |
109 |
Q |
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|||| ||| |||||||||| ||||||||||| |||||||| | | ||||||| ||||| ||||| | ||| |||| ||||||| ||||| |||| |
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| T |
29476059 |
attgaaactaagctttcaaagtaaaccttggtcgagcaccaaaatgtagaattgctacttccattatcattgataatagtactacttgtagtaacctttg |
29476158 |
T |
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| Q |
110 |
ttcgctgcactctattttctttccaattatagaggattggatgggattcttggctggtcttaagcaccagtgtatcagcctcttctgaaagaagaagcgg |
209 |
Q |
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|| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| || || |||||||| ||||| |
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| T |
29476159 |
tttgctctactctattttctctccaattatagagaattggatgggattcttggctgttcttaaataccagtgtatcagcatcctcagaaagaagcagcgg |
29476258 |
T |
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| Q |
210 |
caccaattgaaaatgatactttatc |
234 |
Q |
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||||||||||||||||||||||||| |
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| T |
29476259 |
caccaattgaaaatgatactttatc |
29476283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 29445375 - 29445550
Alignment:
| Q |
16 |
attggaaccaagctttcaacgtaaaccttggctgagcaccacagtatagaattcct------actatcatcggtaacagtagtacttgttgtaacttttg |
109 |
Q |
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|||| ||| ||||||||||||||||||||||| ||| |||||||||||||||| || | |||||| | ||| |||| ||||||| || | ||||| |
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| T |
29445375 |
attgaaactaagctttcaacgtaaaccttggccgagtaccacagtatagaattacttgttccattatcattgataatagtactacttgtagtcaattttg |
29445474 |
T |
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| Q |
110 |
ttcgctgcactctattttctttccaattatagaggattggatgggattcttggctggtcttaagcaccagtgtatc |
185 |
Q |
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|||||| ||||||||||| ||||||||||||| |||| | ||| |||| ||| || |||| ||||||||||| |
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| T |
29445475 |
ttcgctctgctctattttctctccaattatagagaattgcttctgatccttgactgctcctaagtaccagtgtatc |
29445550 |
T |
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