View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7084_low_1 (Length: 739)
Name: NF7084_low_1
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7084_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 6 - 533
Target Start/End: Complemental strand, 30197057 - 30196530
Alignment:
| Q |
6 |
ccgccacagggcccgacagatgcaggtttctttatggaatccacagaactctgcatgcaaaacatcatgcaaaggtgttaaaaagtgaaaagatagttaa |
105 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30197057 |
ccgccccatggcccaacagatgcaggtttctttatggaatccacagaactctgcatgcaaaacatcatgcaaaggtgttaaaaagtgaaaagatagttaa |
30196958 |
T |
|
| Q |
106 |
tgaacatcacctataaggttatgtatgcaatgtgtcataagatattataagagtgcactaccatcctctgcttgtagaaagagaatgatagaccttagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30196957 |
tgaacatcacctataaggttatgtatgcaatgtgtcataagatattgtaagagtgcactaccatcctctgcttgtaggaagagaatgatagaccttagaa |
30196858 |
T |
|
| Q |
206 |
agaaaaatgcagttgcaagtgctaataatgatgtagcaggggaaggcttaagaggaatttatggaagcagaaagttggtttgtggcaaggagctttgtat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30196857 |
agaaaaatgcagttgcaagtgctaataatgatgtagcaggggaaggcttaagaggaatttatggaagcagaaagttggtttgtggcaaggagctttttat |
30196758 |
T |
|
| Q |
306 |
agaaaataataatgataagaaactgttagaagaagctaattctggttccaccatggagggaaagaattgaaagtcagagaatcagattccaaacagaaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30196757 |
agaaaataataatgataagaaactgttagaagaagctaattctggttccaccatggagggaaagaattgaaagtcagagaatcagattccaaacagaaat |
30196658 |
T |
|
| Q |
406 |
cagnnnnnnncttttattacgaaagtttcgtgcactttttatggtcaaggagctaacatttcctttccacgggctattccgtcaattttggtaaaagaaa |
505 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
30196657 |
cagtttttttcttttattaagaaagtttcgtgcactttttatggtcaaggagctaacatttcctttccacgggctattccctcaattttagtaaaagaaa |
30196558 |
T |
|
| Q |
506 |
taaatgactggagaaaaggaacaaatat |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30196557 |
taaatgactggagaaaaggaacaaatat |
30196530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 548 - 722
Target Start/End: Complemental strand, 30196425 - 30196250
Alignment:
| Q |
548 |
tattcgtgggacagttttgattctaccaatattttatagctccactatatttcccatcattattctataatcatctttgaaattattacaatgattgatt |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30196425 |
tattcgtgggacagttttgattctaccaatattttatagctccactatatttcccatcattattctataatcatctttgaaattattacaatgattgatt |
30196326 |
T |
|
| Q |
648 |
tcattaannnnnnnaatatatcttcttgatggaaattgctaacaggacatacatgcaaatc-tttcacctgaaaag |
722 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30196325 |
tcattaatttttttaatatatcttcttgatggaaattgctaacaggacatacatgcaaatcttttcacctgaaaag |
30196250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University